Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21365

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
4,083,772	-	degS	LU632_RS21360	0.13	+2.0
4,083,816	+	degS	LU632_RS21360	0.17	-1.0
4,083,816	+	degS	LU632_RS21360	0.17	-3.0
4,083,899	+	degS	LU632_RS21360	0.25	-0.3
4,083,952	+	degS	LU632_RS21360	0.30	-4.1
4,084,020	-	degS	LU632_RS21360	0.37	-4.9
4,084,055	+	degS	LU632_RS21360	0.40	-4.8
4,084,056	-	degS	LU632_RS21360	0.40	-4.3
4,084,060	+	degS	LU632_RS21360	0.40	-1.2
4,084,110	+	degS	LU632_RS21360	0.45	-4.0
4,084,110	+	degS	LU632_RS21360	0.45	-2.3
4,084,111	-	degS	LU632_RS21360	0.45	-3.1
4,084,112	+	degS	LU632_RS21360	0.45	-2.9
4,084,113	-	degS	LU632_RS21360	0.45	-2.3
4,084,113	-	degS	LU632_RS21360	0.45	-3.7
4,084,142	+	degS	LU632_RS21360	0.48	-2.6
4,084,295	+	degS	LU632_RS21360	0.63	+2.0
4,084,296	-	degS	LU632_RS21360	0.63	-3.7
4,084,296	-	degS	LU632_RS21360	0.63	-5.3
4,084,401	-	degS	LU632_RS21360	0.73	-3.2
4,084,401	-	degS	LU632_RS21360	0.73	-3.9
4,084,407	-	degS	LU632_RS21360	0.73	-3.6
4,084,408	+	degS	LU632_RS21360	0.73	-4.6
4,084,409	-	degS	LU632_RS21360	0.73	+0.5
4,084,433	-	degS	LU632_RS21360	0.76	-2.1
4,084,461	-	degS	LU632_RS21360	0.78	-1.0
4,084,461	-	degS	LU632_RS21360	0.78	+0.5
4,084,461	-	degS	LU632_RS21360	0.78	-2.1
4,084,535	-	degS	LU632_RS21360	0.85	-2.5
4,084,535	-	degS	LU632_RS21360	0.85	-3.6
4,084,547	-	degS	LU632_RS21360	0.86	-2.7
4,084,553	+	degS	LU632_RS21360	0.87	-2.3
4,084,553	+	degS	LU632_RS21360	0.87	-2.3
4,084,628	+				-1.3
4,084,632	-				-3.5
4,084,638	-				-3.7
4,084,689	+				+1.9
4,084,727	+				-1.5
4,084,728	-				-1.2
4,084,728	-				+0.0
4,084,731	+				-0.0
4,084,732	-				+1.8
4,084,774	+				-5.1
4,084,783	+				-4.3
4,084,791	-				-0.3
4,084,823	+				+0.9
4,084,824	-	mdh	LU632_RS21365	0.10	-2.2
4,084,839	-	mdh	LU632_RS21365	0.12	-1.0
4,084,908	+	mdh	LU632_RS21365	0.19	-3.7
4,084,909	-	mdh	LU632_RS21365	0.19	-4.4
4,085,090	+	mdh	LU632_RS21365	0.38	-0.8
4,085,201	-	mdh	LU632_RS21365	0.50	-4.8
4,085,274	-	mdh	LU632_RS21365	0.58	-3.7
4,085,300	-	mdh	LU632_RS21365	0.61	-1.7
4,085,344	+	mdh	LU632_RS21365	0.66	-3.3
4,085,344	+	mdh	LU632_RS21365	0.66	-2.0
4,085,344	+	mdh	LU632_RS21365	0.66	-4.1
4,085,368	+	mdh	LU632_RS21365	0.68	+1.0
4,085,387	-	mdh	LU632_RS21365	0.70	-0.5
4,085,397	-	mdh	LU632_RS21365	0.71	-3.5
4,085,476	+	mdh	LU632_RS21365	0.80	-3.7
4,085,501	-	mdh	LU632_RS21365	0.82	-0.8
4,085,563	+	mdh	LU632_RS21365	0.89	+2.0
4,085,669	-				-2.1
4,085,681	-				-2.5
4,085,681	-				-1.2
4,085,682	+				-3.3
4,085,683	-				-1.9
4,085,683	-				-2.4
4,085,685	+				-3.0
4,085,685	+				-4.3
4,085,788	+				-1.3
4,085,789	-				-1.7
4,085,789	-				-0.6
4,085,814	-				-1.0
4,085,816	+				-2.8
4,085,855	-				+0.7
4,085,915	-				-1.4
4,086,032	-				-1.0
4,086,279	+	argR	LU632_RS21370	0.42	-0.3
4,086,488	-	argR	LU632_RS21370	0.86	+2.0
4,086,548	-				-1.8
4,086,581	+				-0.6
4,086,582	-				+0.3
4,086,623	+				+1.8
4,086,623	-				-1.3
4,086,662	+				-0.8
4,086,663	-				+1.5
4,086,663	-				+1.8