Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20880

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
3,989,154	+				+0.6
3,989,154	+				+1.0
3,989,154	+				+0.6
3,989,154	+				+1.9
3,989,186	-				+1.7
3,989,198	-				-0.8
3,989,204	-				+0.4
3,989,212	-		LU632_RS20880	0.10	-2.1
3,989,212	-		LU632_RS20880	0.10	+0.7
3,989,379	+		LU632_RS20880	0.38	+0.3
3,989,380	-		LU632_RS20880	0.39	-1.3
3,989,380	-		LU632_RS20880	0.39	-1.6
3,989,531	-		LU632_RS20880	0.64	+2.2
3,989,546	-		LU632_RS20880	0.67	+1.1
3,989,546	-		LU632_RS20880	0.67	+0.3
3,989,546	-		LU632_RS20880	0.67	-1.3
3,989,549	+		LU632_RS20880	0.67	-0.2
3,989,549	+		LU632_RS20880	0.67	+0.2
3,989,550	-		LU632_RS20880	0.68	+0.5
3,989,671	+		LU632_RS20880	0.88	+0.4
3,989,751	+				-2.1
3,989,752	-				-0.1
3,989,809	-				-2.0
3,990,010	+				+1.2
3,990,013	+				+0.2
3,990,013	+				+1.2
3,990,013	+				+2.0
3,990,112	+				+0.6
3,990,196	+		LU632_RS20885	0.28	-2.3
3,990,196	+		LU632_RS20885	0.28	+1.0
3,990,197	-		LU632_RS20885	0.29	-1.0
3,990,350	+		LU632_RS20885	0.76	-1.3
3,990,394	+				+0.7
3,990,429	+				-0.8
3,990,429	+				-2.2
3,990,429	+				-3.0
3,990,429	+				-1.1
3,990,430	-				+1.0
3,990,430	-				-1.7
3,990,462	+				-0.3
3,990,666	-				-0.5