Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18975

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
3,580,436	-		LU632_RS18965	0.85	-0.9
3,580,477	+				+0.3
3,580,572	+				-0.2
3,580,574	+				-2.2
3,580,574	+				+0.2
3,580,575	-				-0.4
3,580,626	-				-2.8
3,580,633	+				+0.3
3,580,740	+				-0.1
3,580,740	+				-0.1
3,580,740	+				+0.5
3,580,741	-				-0.7
3,580,741	-				+0.5
3,580,783	+		LU632_RS18970	0.21	-2.2
3,580,895	-		LU632_RS18970	0.80	-2.7
3,580,897	+		LU632_RS18970	0.81	+0.3
3,581,004	+				+0.8
3,581,007	-				+2.4
3,581,095	+				-2.2
3,581,096	-				+1.2
3,581,294	-				-2.2
3,581,294	-				-0.4
3,581,296	+				+0.7
3,581,303	+				-3.3
3,581,304	-				+2.3
3,581,340	+	aroL	LU632_RS18975	0.15	+0.3
3,581,340	+	aroL	LU632_RS18975	0.15	+0.7
3,581,340	+	aroL	LU632_RS18975	0.15	-0.3
3,581,340	+	aroL	LU632_RS18975	0.15	+1.1
3,581,340	+	aroL	LU632_RS18975	0.15	-0.3
3,581,341	-	aroL	LU632_RS18975	0.15	-1.7
3,581,341	-	aroL	LU632_RS18975	0.15	+1.2
3,581,469	-	aroL	LU632_RS18975	0.40	+0.7
3,581,469	-	aroL	LU632_RS18975	0.40	-0.9
3,581,469	-	aroL	LU632_RS18975	0.40	-1.2
3,581,490	+	aroL	LU632_RS18975	0.44	-0.9
3,581,494	+	aroL	LU632_RS18975	0.44	+0.8
3,581,495	-	aroL	LU632_RS18975	0.45	-1.1
3,581,495	-	aroL	LU632_RS18975	0.45	+0.3
3,581,495	-	aroL	LU632_RS18975	0.45	-0.1
3,581,607	-	aroL	LU632_RS18975	0.66	+0.5
3,581,744	-				-2.2
3,581,770	-				+0.1
3,581,786	-				-0.5
3,581,786	-				+0.4
3,581,786	-				-0.3
3,581,786	-				-0.8
3,581,842	+				+1.0
3,581,843	-				-0.6
3,581,868	-				+0.3
3,582,016	+				-1.5
3,582,058	+				+1.2
3,582,067	-				-1.7
3,582,067	-				+0.5
3,582,114	+				-2.9
3,582,114	+				+0.6
3,582,139	-				-1.9
3,582,227	+		LU632_RS18980	0.19	+0.3
3,582,227	+		LU632_RS18980	0.19	-0.2
3,582,228	-		LU632_RS18980	0.19	-2.1
3,582,228	-		LU632_RS18980	0.19	-0.8
3,582,228	-		LU632_RS18980	0.19	+0.8
3,582,230	+		LU632_RS18980	0.19	+0.4
3,582,230	+		LU632_RS18980	0.19	-0.3
3,582,231	-		LU632_RS18980	0.20	+0.2
3,582,231	-		LU632_RS18980	0.20	+0.6
3,582,277	+		LU632_RS18980	0.26	-0.4
3,582,277	+		LU632_RS18980	0.26	+1.6
3,582,278	-		LU632_RS18980	0.26	+0.3
3,582,354	+		LU632_RS18980	0.37	+2.7
3,582,563	-		LU632_RS18980	0.67	-1.3
3,582,649	+		LU632_RS18980	0.79	+1.6
3,582,650	-		LU632_RS18980	0.79	+0.4
3,582,683	-		LU632_RS18980	0.83	+1.6
3,582,769	+				-0.4