Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18485

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
3,493,000	+		LU632_RS18480	0.46	+1.8
3,493,046	+		LU632_RS18480	0.53	+1.6
3,493,047	-		LU632_RS18480	0.54	-1.8
3,493,047	-		LU632_RS18480	0.54	-0.1
3,493,057	-		LU632_RS18480	0.55	-0.1
3,493,079	+		LU632_RS18480	0.59	-0.1
3,493,095	-		LU632_RS18480	0.62	+2.5
3,493,095	-		LU632_RS18480	0.62	-2.1
3,493,143	+		LU632_RS18480	0.70	+2.0
3,493,186	-		LU632_RS18480	0.77	+0.5
3,493,206	-		LU632_RS18480	0.81	+0.4
3,493,206	-		LU632_RS18480	0.81	-1.2
3,493,243	+		LU632_RS18480	0.87	+0.1
3,493,244	-		LU632_RS18480	0.87	-1.9
3,493,244	-		LU632_RS18480	0.87	+0.4
3,493,244	-		LU632_RS18480	0.87	-2.0
3,493,244	-		LU632_RS18480	0.87	-0.3
3,493,244	-		LU632_RS18480	0.87	-1.1
3,493,297	-				-1.9
3,493,326	+				+0.5
3,493,326	+				-1.4
3,493,326	+				-0.1
3,493,328	+				+0.4
3,493,329	-				-1.1
3,493,336	+				-2.4
3,493,337	-				+0.1
3,493,337	-				-0.9
3,493,446	+				+0.3
3,493,446	+				+0.2
3,493,446	+				+1.2
3,493,447	-				+0.5
3,493,447	-				-0.3
3,493,447	-				+1.1
3,493,448	+				+0.9
3,493,448	+				-0.9
3,493,448	+				+2.3
3,493,449	-				+0.2
3,493,637	+	queA	LU632_RS18485	0.13	+3.5
3,493,955	-	queA	LU632_RS18485	0.42	+0.9
3,494,121	-	queA	LU632_RS18485	0.58	-2.4
3,494,169	+	queA	LU632_RS18485	0.62	+3.3
3,494,170	-	queA	LU632_RS18485	0.62	-0.7
3,494,172	+	queA	LU632_RS18485	0.63	+0.7
3,494,173	-	queA	LU632_RS18485	0.63	+0.8
3,494,173	-	queA	LU632_RS18485	0.63	+2.3
3,494,185	+	queA	LU632_RS18485	0.64	+0.3
3,494,186	-	queA	LU632_RS18485	0.64	+0.3
3,494,210	+	queA	LU632_RS18485	0.66	-2.1
3,494,210	+	queA	LU632_RS18485	0.66	+2.3
3,494,229	+	queA	LU632_RS18485	0.68	-2.4
3,494,425	-	queA	LU632_RS18485	0.86	+0.6
3,494,509	+				-1.1
3,494,526	+				+1.5
3,494,526	+				-0.9