Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18070

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
3,411,703	-	ushA	LU632_RS18065	0.47	+0.3
3,411,704	+	ushA	LU632_RS18065	0.47	-0.9
3,411,704	+	ushA	LU632_RS18065	0.47	+2.1
3,411,705	-	ushA	LU632_RS18065	0.47	+1.5
3,411,705	-	ushA	LU632_RS18065	0.47	+0.5
3,411,779	+	ushA	LU632_RS18065	0.51	-1.6
3,411,780	-	ushA	LU632_RS18065	0.51	+0.3
3,411,792	+	ushA	LU632_RS18065	0.52	-2.8
3,411,810	+	ushA	LU632_RS18065	0.53	-0.4
3,411,811	-	ushA	LU632_RS18065	0.53	-0.1
3,411,811	-	ushA	LU632_RS18065	0.53	+1.6
3,411,846	+	ushA	LU632_RS18065	0.55	-1.3
3,411,846	+	ushA	LU632_RS18065	0.55	-2.2
3,411,847	+	ushA	LU632_RS18065	0.55	+0.9
3,411,847	-	ushA	LU632_RS18065	0.55	+0.3
3,411,923	+	ushA	LU632_RS18065	0.60	-2.5
3,411,949	-	ushA	LU632_RS18065	0.62	+1.2
3,411,973	-	ushA	LU632_RS18065	0.63	-2.7
3,412,161	+	ushA	LU632_RS18065	0.74	-1.7
3,412,161	+	ushA	LU632_RS18065	0.74	+0.4
3,412,161	+	ushA	LU632_RS18065	0.74	+0.6
3,412,162	-	ushA	LU632_RS18065	0.74	-0.7
3,412,332	+	ushA	LU632_RS18065	0.85	+3.2
3,412,332	+	ushA	LU632_RS18065	0.85	+1.4
3,412,333	-	ushA	LU632_RS18065	0.85	-0.7
3,412,350	+	ushA	LU632_RS18065	0.86	-1.8
3,412,351	-	ushA	LU632_RS18065	0.86	+1.7
3,412,489	-				-0.8
3,412,497	+				-1.4
3,412,497	+				-0.8
3,412,498	-				+1.4
3,412,498	-				+2.4
3,412,498	-				-0.1
3,412,503	+				+0.4
3,412,631	+				+1.2
3,412,758	-				-0.9
3,412,772	+				+2.1
3,412,881	-		LU632_RS18070	0.18	-0.7
3,412,890	+		LU632_RS18070	0.19	-0.1
3,412,898	+		LU632_RS18070	0.20	+1.3
3,412,898	+		LU632_RS18070	0.20	+0.2
3,412,899	-		LU632_RS18070	0.20	-0.2
3,412,940	+		LU632_RS18070	0.23	+2.1
3,412,941	-		LU632_RS18070	0.23	+1.9
3,412,984	-		LU632_RS18070	0.27	-1.5
3,413,155	+		LU632_RS18070	0.41	-2.1
3,413,155	+		LU632_RS18070	0.41	+0.2
3,413,155	+		LU632_RS18070	0.41	+1.3
3,413,156	-		LU632_RS18070	0.41	+0.3
3,413,156	-		LU632_RS18070	0.41	-0.6
3,413,156	-		LU632_RS18070	0.41	+0.9
3,413,156	-		LU632_RS18070	0.41	+1.9
3,413,362	-		LU632_RS18070	0.59	+0.6
3,413,389	-		LU632_RS18070	0.61	+1.2
3,413,389	-		LU632_RS18070	0.61	+0.6
3,413,391	+		LU632_RS18070	0.61	-2.1
3,413,400	+		LU632_RS18070	0.62	-2.4
3,413,401	-		LU632_RS18070	0.62	-0.3
3,413,412	-		LU632_RS18070	0.63	-0.5
3,413,444	-		LU632_RS18070	0.65	-1.3
3,413,486	+		LU632_RS18070	0.69	+0.0
3,413,486	+		LU632_RS18070	0.69	-0.1
3,413,486	+		LU632_RS18070	0.69	+2.5
3,413,486	+		LU632_RS18070	0.69	-2.3
3,413,567	-		LU632_RS18070	0.76	-1.7
3,413,589	-		LU632_RS18070	0.78	+0.5
3,413,726	+		LU632_RS18070	0.89	+1.4
3,413,784	+				-0.9
3,414,024	-				-1.0
3,414,024	-				-0.2
3,414,061	+				+0.3
3,414,106	-				+0.7
3,414,145	-				-0.4
3,414,165	+				+1.3
3,414,165	+				-3.2
3,414,165	+				+0.4
3,414,166	-				-0.1
3,414,166	-				-2.6
3,414,217	-				-3.0
3,414,273	-		LU632_RS18075	0.12	-0.2
3,414,282	-		LU632_RS18075	0.12	-1.6
3,414,462	+		LU632_RS18075	0.23	-0.7
3,414,467	+		LU632_RS18075	0.23	-1.7
3,414,675	+		LU632_RS18075	0.35	-1.3
3,414,676	-		LU632_RS18075	0.35	+2.5
3,414,676	-		LU632_RS18075	0.35	+1.0
3,414,692	+		LU632_RS18075	0.36	+1.9
3,414,692	+		LU632_RS18075	0.36	+0.3
3,414,693	-		LU632_RS18075	0.36	+0.3
3,414,693	-		LU632_RS18075	0.36	-3.3
3,414,696	-		LU632_RS18075	0.37	-1.5
3,414,696	-		LU632_RS18075	0.37	+1.0
3,414,813	-		LU632_RS18075	0.44	+2.9