Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11025

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
2,107,503	-				+0.4
2,107,825	+				+0.4
2,107,830	-				+0.0
2,107,830	-				+0.9
2,107,830	-				+0.1
2,107,837	-				+0.3
2,107,889	-				-1.5
2,107,890	+				-1.7
2,107,962	+				-0.0
2,107,962	+				+2.0
2,107,963	-				+0.8
2,107,985	+				+1.5
2,108,143	-	ppsA	LU632_RS11025	0.12	-1.3
2,108,253	+	ppsA	LU632_RS11025	0.17	-1.0
2,108,254	-	ppsA	LU632_RS11025	0.17	-0.1
2,108,254	-	ppsA	LU632_RS11025	0.17	+0.2
2,108,254	-	ppsA	LU632_RS11025	0.17	-0.4
2,108,392	+	ppsA	LU632_RS11025	0.23	-4.0
2,108,515	-	ppsA	LU632_RS11025	0.28	+0.7
2,108,524	+	ppsA	LU632_RS11025	0.28	+0.3
2,108,575	+	ppsA	LU632_RS11025	0.30	+0.5
2,108,575	+	ppsA	LU632_RS11025	0.30	+1.1
2,108,575	+	ppsA	LU632_RS11025	0.30	+1.0
2,108,575	+	ppsA	LU632_RS11025	0.30	-0.9
2,108,576	-	ppsA	LU632_RS11025	0.30	+0.8
2,108,576	-	ppsA	LU632_RS11025	0.30	+0.9
2,108,687	+	ppsA	LU632_RS11025	0.35	-2.9
2,108,687	+	ppsA	LU632_RS11025	0.35	-1.6
2,108,687	+	ppsA	LU632_RS11025	0.35	-0.6
2,108,688	-	ppsA	LU632_RS11025	0.35	-1.2
2,108,771	+	ppsA	LU632_RS11025	0.39	-0.2
2,108,772	-	ppsA	LU632_RS11025	0.39	-0.3
2,108,899	+	ppsA	LU632_RS11025	0.44	-0.6
2,108,901	+	ppsA	LU632_RS11025	0.44	-1.5
2,108,901	+	ppsA	LU632_RS11025	0.44	-2.4
2,108,902	-	ppsA	LU632_RS11025	0.44	+0.1
2,108,902	-	ppsA	LU632_RS11025	0.44	+0.9
2,108,902	-	ppsA	LU632_RS11025	0.44	-1.1
2,108,902	-	ppsA	LU632_RS11025	0.44	-2.4
2,108,902	-	ppsA	LU632_RS11025	0.44	-1.3
2,109,087	-	ppsA	LU632_RS11025	0.52	-1.3
2,109,087	-	ppsA	LU632_RS11025	0.52	+0.8
2,109,196	-	ppsA	LU632_RS11025	0.56	-0.6
2,109,196	-	ppsA	LU632_RS11025	0.56	-1.1
2,109,233	-	ppsA	LU632_RS11025	0.58	-1.8
2,109,462	-	ppsA	LU632_RS11025	0.68	-0.7
2,109,462	-	ppsA	LU632_RS11025	0.68	-0.7
2,109,514	+	ppsA	LU632_RS11025	0.70	-0.7
2,109,514	+	ppsA	LU632_RS11025	0.70	-0.0
2,109,738	-	ppsA	LU632_RS11025	0.79	-1.1
2,109,795	-	ppsA	LU632_RS11025	0.81	+1.0
2,109,821	+	ppsA	LU632_RS11025	0.83	+0.1
2,109,879	+	ppsA	LU632_RS11025	0.85	+0.8
2,109,880	-	ppsA	LU632_RS11025	0.85	+0.3
2,109,880	-	ppsA	LU632_RS11025	0.85	+1.9
2,109,880	-	ppsA	LU632_RS11025	0.85	+0.1
2,110,052	+				+0.7
2,110,052	+				-1.1
2,110,053	-				-2.3
2,110,056	+				+0.9
2,110,057	-				+1.2
2,110,086	+				-0.0
2,110,090	+				+0.7
2,110,090	+				-1.3
2,110,242	+				+0.5
2,110,247	-				+1.1
2,110,392	-				+1.0
2,110,451	-				+0.3
2,110,500	+				+0.5
2,110,503	+				-1.1
2,110,625	+				+0.1
2,110,625	+				-2.5
2,110,652	-				+1.1
2,110,745	+				-0.0
2,110,821	+	ydiK	LU632_RS11035	0.15	+0.7
2,110,917	+	ydiK	LU632_RS11035	0.24	+0.7
2,111,019	+	ydiK	LU632_RS11035	0.33	-2.2
2,111,064	-	ydiK	LU632_RS11035	0.37	-1.8
2,111,064	-	ydiK	LU632_RS11035	0.37	-2.2