Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08675

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
1,624,529	+				+1.6
1,624,577	+				-0.4
1,624,629	+				+1.3
1,624,665	+				-1.2
1,624,665	+				-1.2
1,624,665	+				-2.0
1,624,666	-				-1.1
1,624,700	+				+1.4
1,624,701	-				+0.2
1,624,742	+				-2.5
1,624,742	+				+1.4
1,624,893	+	baeR	LU632_RS08670	0.15	+1.9
1,624,893	+	baeR	LU632_RS08670	0.15	+2.0
1,624,893	+	baeR	LU632_RS08670	0.15	+0.2
1,624,894	+	baeR	LU632_RS08670	0.16	-4.5
1,624,894	-	baeR	LU632_RS08670	0.16	-0.4
1,624,939	+	baeR	LU632_RS08670	0.22	+1.1
1,625,111	+	baeR	LU632_RS08670	0.46	+0.4
1,625,111	+	baeR	LU632_RS08670	0.46	-0.0
1,625,111	+	baeR	LU632_RS08670	0.46	+0.6
1,625,111	+	baeR	LU632_RS08670	0.46	+1.3
1,625,111	+	baeR	LU632_RS08670	0.46	-2.2
1,625,112	-	baeR	LU632_RS08670	0.47	-1.1
1,625,174	+	baeR	LU632_RS08670	0.55	+1.7
1,625,175	-	baeR	LU632_RS08670	0.56	+0.2
1,625,182	+	baeR	LU632_RS08670	0.57	-0.2
1,625,286	+	baeR	LU632_RS08670	0.71	+2.2
1,625,325	+	baeR	LU632_RS08670	0.77	+0.7
1,625,364	+	baeR	LU632_RS08670	0.82	+1.0
1,625,365	-	baeR	LU632_RS08670	0.83	-0.2
1,625,416	+				+0.6
1,625,417	-				+0.1
1,625,489	+				-1.4
1,625,489	+				+0.3
1,625,490	-				+0.6
1,625,526	-				+0.0
1,625,534	-				+0.4
1,625,542	+				+0.8
1,625,543	-				-1.7
1,625,543	-				+0.8
1,625,548	+				-0.5
1,625,548	+				+0.6
1,625,548	+				-0.5
1,625,549	-				-0.2
1,625,549	-				+0.3
1,625,553	+				+1.1
1,625,554	-				-1.0
1,625,737	-	baeS	LU632_RS08675	0.15	-1.2
1,625,808	+	baeS	LU632_RS08675	0.20	-2.9
1,625,808	+	baeS	LU632_RS08675	0.20	-1.5
1,625,854	-	baeS	LU632_RS08675	0.24	+1.2
1,625,896	+	baeS	LU632_RS08675	0.27	+0.1
1,625,897	-	baeS	LU632_RS08675	0.27	-1.6
1,625,925	-	baeS	LU632_RS08675	0.29	-2.6
1,625,973	+	baeS	LU632_RS08675	0.32	-2.2
1,625,977	-	baeS	LU632_RS08675	0.33	-0.2
1,626,172	-	baeS	LU632_RS08675	0.47	+2.9
1,626,180	+	baeS	LU632_RS08675	0.47	-1.1
1,626,496	+	baeS	LU632_RS08675	0.70	+0.2
1,626,498	+	baeS	LU632_RS08675	0.70	+1.3
1,626,499	-	baeS	LU632_RS08675	0.70	+0.2
1,626,499	-	baeS	LU632_RS08675	0.70	+0.7
1,626,576	-	baeS	LU632_RS08675	0.76	-1.1
1,626,722	+	baeS	LU632_RS08675	0.86	+1.6
1,627,019	-				+0.5
1,627,019	-				+0.5
1,627,124	+	mdtD	LU632_RS08680	0.16	+0.3
1,627,232	+	mdtD	LU632_RS08680	0.24	-0.6
1,627,232	+	mdtD	LU632_RS08680	0.24	+0.1
1,627,319	+	mdtD	LU632_RS08680	0.31	+0.5
1,627,323	+	mdtD	LU632_RS08680	0.31	+0.2
1,627,323	+	mdtD	LU632_RS08680	0.31	+0.7
1,627,324	-	mdtD	LU632_RS08680	0.31	+0.6
1,627,371	-	mdtD	LU632_RS08680	0.35	+2.6
1,627,377	+	mdtD	LU632_RS08680	0.35	+0.8
1,627,377	+	mdtD	LU632_RS08680	0.35	+0.7
1,627,379	+	mdtD	LU632_RS08680	0.36	-1.4
1,627,379	+	mdtD	LU632_RS08680	0.36	-0.1
1,627,386	-	mdtD	LU632_RS08680	0.36	+0.3
1,627,386	-	mdtD	LU632_RS08680	0.36	+0.3
1,627,467	+	mdtD	LU632_RS08680	0.42	+1.9
1,627,470	-	mdtD	LU632_RS08680	0.42	-2.1
1,627,470	-	mdtD	LU632_RS08680	0.42	+1.9
1,627,528	+	mdtD	LU632_RS08680	0.47	-2.1
1,627,529	-	mdtD	LU632_RS08680	0.47	+0.3
1,627,545	+	mdtD	LU632_RS08680	0.48	-0.9
1,627,546	-	mdtD	LU632_RS08680	0.48	+1.0
1,627,595	-	mdtD	LU632_RS08680	0.52	+1.4
1,627,661	-	mdtD	LU632_RS08680	0.57	+0.3
1,627,661	-	mdtD	LU632_RS08680	0.57	-2.1
1,627,795	+	mdtD	LU632_RS08680	0.67	+1.6
1,627,824	+	mdtD	LU632_RS08680	0.69	+0.2
1,627,897	+	mdtD	LU632_RS08680	0.75	-0.5
1,627,897	+	mdtD	LU632_RS08680	0.75	-1.4
1,627,898	-	mdtD	LU632_RS08680	0.75	+0.3
1,627,898	-	mdtD	LU632_RS08680	0.75	+0.5
1,627,908	+	mdtD	LU632_RS08680	0.76	+0.1
1,627,908	+	mdtD	LU632_RS08680	0.76	-1.0
1,627,908	+	mdtD	LU632_RS08680	0.76	+1.1
1,627,908	+	mdtD	LU632_RS08680	0.76	+2.4
1,627,908	+	mdtD	LU632_RS08680	0.76	-0.1
1,627,908	+	mdtD	LU632_RS08680	0.76	+0.6
1,627,908	+	mdtD	LU632_RS08680	0.76	-2.2
1,627,908	+	mdtD	LU632_RS08680	0.76	+1.1
1,627,909	-	mdtD	LU632_RS08680	0.76	+0.2
1,627,909	-	mdtD	LU632_RS08680	0.76	-0.5
1,627,909	-	mdtD	LU632_RS08680	0.76	+0.7
1,627,909	-	mdtD	LU632_RS08680	0.76	+0.3
1,627,909	-	mdtD	LU632_RS08680	0.76	-0.2
1,627,909	-	mdtD	LU632_RS08680	0.76	+0.3
1,627,909	-	mdtD	LU632_RS08680	0.76	-1.7
1,627,909	-	mdtD	LU632_RS08680	0.76	+1.9
1,627,909	-	mdtD	LU632_RS08680	0.76	-0.2