Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt syd and LU632_RS06290 are separated by 552 nucleotides LU632_RS06290 and truC overlap by 1 nucleotides truC and LU632_RS06300 are separated by 21 nucleotides
LU632_RS06285: syd - SecY-interacting protein, at 1,203,555 to 1,204,130
syd
LU632_RS06290: LU632_RS06290 - YqcC family protein, at 1,204,683 to 1,205,006
_RS06290
LU632_RS06295: truC - tRNA pseudouridine(65) synthase TruC, at 1,205,006 to 1,205,785
truC
LU632_RS06300: LU632_RS06300 - flavodoxin, at 1,205,807 to 1,206,256
_RS06300
Position (kb) 1204
1205
1206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1203.686 kb on + strand, within syd at 1203.722 kb on + strand, within syd at 1203.795 kb on + strand, within syd at 1203.796 kb on - strand, within syd at 1203.797 kb on + strand, within syd at 1203.797 kb on + strand, within syd at 1203.797 kb on + strand, within syd at 1203.797 kb on + strand, within syd at 1203.798 kb on - strand, within syd at 1203.818 kb on + strand, within syd at 1203.818 kb on + strand, within syd at 1203.819 kb on - strand, within syd at 1203.962 kb on + strand, within syd at 1203.963 kb on - strand, within syd at 1203.984 kb on - strand, within syd at 1203.984 kb on - strand, within syd at 1203.984 kb on - strand, within syd at 1203.996 kb on - strand, within syd at 1204.662 kb on + strand at 1204.714 kb on + strand at 1204.735 kb on + strand, within LU632_RS06290 at 1204.807 kb on + strand, within LU632_RS06290 at 1204.808 kb on - strand, within LU632_RS06290 at 1204.808 kb on - strand, within LU632_RS06290 at 1204.812 kb on - strand, within LU632_RS06290 at 1204.915 kb on - strand, within LU632_RS06290 at 1204.917 kb on + strand, within LU632_RS06290 at 1204.918 kb on - strand, within LU632_RS06290 at 1204.918 kb on - strand, within LU632_RS06290 at 1204.918 kb on - strand, within LU632_RS06290 at 1204.918 kb on - strand, within LU632_RS06290 at 1204.918 kb on - strand, within LU632_RS06290 at 1204.940 kb on + strand, within LU632_RS06290 at 1204.941 kb on - strand, within LU632_RS06290 at 1204.941 kb on - strand, within LU632_RS06290 at 1205.017 kb on + strand at 1205.017 kb on + strand at 1205.017 kb on + strand at 1205.018 kb on - strand at 1205.022 kb on - strand at 1205.022 kb on - strand at 1205.184 kb on + strand, within truC at 1205.251 kb on - strand, within truC at 1205.251 kb on - strand, within truC at 1205.261 kb on + strand, within truC at 1205.261 kb on + strand, within truC at 1205.262 kb on - strand, within truC at 1205.262 kb on - strand, within truC at 1205.262 kb on - strand, within truC at 1205.309 kb on + strand, within truC at 1205.310 kb on - strand, within truC at 1205.496 kb on + strand, within truC at 1205.496 kb on + strand, within truC at 1205.497 kb on - strand, within truC at 1205.506 kb on + strand, within truC at 1205.506 kb on + strand, within truC at 1205.506 kb on + strand, within truC at 1205.507 kb on - strand, within truC at 1205.661 kb on + strand, within truC at 1205.834 kb on - strand at 1205.945 kb on + strand, within LU632_RS06300 at 1205.945 kb on + strand, within LU632_RS06300 at 1205.945 kb on + strand, within LU632_RS06300 at 1205.946 kb on - strand, within LU632_RS06300
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS) remove 1,203,686 + syd LU632_RS06285 0.23 +0.0 1,203,722 + syd LU632_RS06285 0.29 +0.9 1,203,795 + syd LU632_RS06285 0.42 -1.1 1,203,796 - syd LU632_RS06285 0.42 -1.0 1,203,797 + syd LU632_RS06285 0.42 +0.7 1,203,797 + syd LU632_RS06285 0.42 -2.7 1,203,797 + syd LU632_RS06285 0.42 -1.7 1,203,797 + syd LU632_RS06285 0.42 +1.6 1,203,798 - syd LU632_RS06285 0.42 -2.5 1,203,818 + syd LU632_RS06285 0.46 +0.4 1,203,818 + syd LU632_RS06285 0.46 +1.8 1,203,819 - syd LU632_RS06285 0.46 -0.1 1,203,962 + syd LU632_RS06285 0.71 -0.9 1,203,963 - syd LU632_RS06285 0.71 -1.1 1,203,984 - syd LU632_RS06285 0.74 -1.8 1,203,984 - syd LU632_RS06285 0.74 +0.1 1,203,984 - syd LU632_RS06285 0.74 -0.1 1,203,996 - syd LU632_RS06285 0.77 +0.0 1,204,662 + +0.4 1,204,714 + +0.5 1,204,735 + LU632_RS06290 0.16 +1.2 1,204,807 + LU632_RS06290 0.38 -0.1 1,204,808 - LU632_RS06290 0.39 +0.4 1,204,808 - LU632_RS06290 0.39 +0.8 1,204,812 - LU632_RS06290 0.40 -3.3 1,204,915 - LU632_RS06290 0.72 -0.7 1,204,917 + LU632_RS06290 0.72 -0.1 1,204,918 - LU632_RS06290 0.73 -2.5 1,204,918 - LU632_RS06290 0.73 -1.2 1,204,918 - LU632_RS06290 0.73 -1.4 1,204,918 - LU632_RS06290 0.73 +2.8 1,204,918 - LU632_RS06290 0.73 +0.3 1,204,940 + LU632_RS06290 0.79 +1.1 1,204,941 - LU632_RS06290 0.80 +2.2 1,204,941 - LU632_RS06290 0.80 -1.4 1,205,017 + +0.5 1,205,017 + +0.8 1,205,017 + +1.1 1,205,018 - -1.1 1,205,022 - -3.0 1,205,022 - -1.4 1,205,184 + truC LU632_RS06295 0.23 -1.4 1,205,251 - truC LU632_RS06295 0.31 +1.9 1,205,251 - truC LU632_RS06295 0.31 -0.9 1,205,261 + truC LU632_RS06295 0.33 -2.6 1,205,261 + truC LU632_RS06295 0.33 +0.6 1,205,262 - truC LU632_RS06295 0.33 +1.0 1,205,262 - truC LU632_RS06295 0.33 -0.5 1,205,262 - truC LU632_RS06295 0.33 -1.2 1,205,309 + truC LU632_RS06295 0.39 -0.7 1,205,310 - truC LU632_RS06295 0.39 -0.3 1,205,496 + truC LU632_RS06295 0.63 +0.9 1,205,496 + truC LU632_RS06295 0.63 -1.0 1,205,497 - truC LU632_RS06295 0.63 +0.6 1,205,506 + truC LU632_RS06295 0.64 +0.1 1,205,506 + truC LU632_RS06295 0.64 +0.2 1,205,506 + truC LU632_RS06295 0.64 +1.1 1,205,507 - truC LU632_RS06295 0.64 -0.3 1,205,661 + truC LU632_RS06295 0.84 +0.5 1,205,834 - +0.8 1,205,945 + LU632_RS06300 0.31 -1.0 1,205,945 + LU632_RS06300 0.31 +1.3 1,205,945 + LU632_RS06300 0.31 +0.7 1,205,946 - LU632_RS06300 0.31 +0.9
Or see this region's nucleotide sequence