Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05910

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
1,120,273	-	gcvT	LU632_RS05905	0.20	-0.7
1,120,276	+	gcvT	LU632_RS05905	0.20	+0.7
1,120,276	+	gcvT	LU632_RS05905	0.20	-0.5
1,120,634	+	gcvT	LU632_RS05905	0.53	+1.0
1,120,757	+	gcvT	LU632_RS05905	0.64	-0.6
1,120,801	+	gcvT	LU632_RS05905	0.68	-3.1
1,120,839	-	gcvT	LU632_RS05905	0.72	+2.3
1,120,951	+	gcvT	LU632_RS05905	0.82	+0.4
1,120,951	+	gcvT	LU632_RS05905	0.82	-1.3
1,121,024	-	gcvT	LU632_RS05905	0.89	+0.8
1,121,024	-	gcvT	LU632_RS05905	0.89	+0.4
1,121,076	+				+2.5
1,121,076	+				+1.0
1,121,077	-				+0.7
1,121,077	-				-2.4
1,121,148	-				-0.4
1,121,196	+				+1.6
1,121,232	+				-2.6
1,121,233	-				+0.4
1,121,236	+				-2.7
1,121,249	+				+2.4
1,121,251	-				-1.5
1,121,375	+	gcvH	LU632_RS05910	0.40	-0.5
1,121,376	-	gcvH	LU632_RS05910	0.40	-2.3
1,121,432	+	gcvH	LU632_RS05910	0.54	-1.4
1,121,432	+	gcvH	LU632_RS05910	0.54	+1.0
1,121,432	+	gcvH	LU632_RS05910	0.54	+0.4
1,121,432	+	gcvH	LU632_RS05910	0.54	+0.4
1,121,432	+	gcvH	LU632_RS05910	0.54	-1.3
1,121,432	+	gcvH	LU632_RS05910	0.54	-0.9
1,121,432	+	gcvH	LU632_RS05910	0.54	-0.5
1,121,432	+	gcvH	LU632_RS05910	0.54	-2.0
1,121,432	+	gcvH	LU632_RS05910	0.54	+0.5
1,121,432	+	gcvH	LU632_RS05910	0.54	-1.2
1,121,433	-	gcvH	LU632_RS05910	0.55	+3.5
1,121,433	-	gcvH	LU632_RS05910	0.55	-0.2
1,121,433	-	gcvH	LU632_RS05910	0.55	-0.0
1,121,433	-	gcvH	LU632_RS05910	0.55	-0.2
1,121,463	+	gcvH	LU632_RS05910	0.62	-0.4
1,121,464	-	gcvH	LU632_RS05910	0.63	+1.4
1,121,587	+				+1.1
1,121,597	-				+0.0
1,121,597	-				+0.2
1,121,597	-				+1.0
1,121,661	+				+0.3
1,121,661	+				+0.9
1,121,673	+				-0.1
1,121,779	-				+1.2
1,121,873	-				+0.8
1,121,881	+				-0.0
1,121,896	+				-1.0
1,121,956	+	gcvP	LU632_RS05915	0.11	+0.0
1,121,965	+	gcvP	LU632_RS05915	0.12	-0.6
1,121,965	+	gcvP	LU632_RS05915	0.12	-2.0
1,121,966	-	gcvP	LU632_RS05915	0.12	+0.0
1,122,030	-	gcvP	LU632_RS05915	0.14	-1.7
1,122,131	+	gcvP	LU632_RS05915	0.17	+1.0
1,122,131	+	gcvP	LU632_RS05915	0.17	+0.4
1,122,256	+	gcvP	LU632_RS05915	0.22	+0.4
1,122,316	+	gcvP	LU632_RS05915	0.24	+0.8
1,122,316	+	gcvP	LU632_RS05915	0.24	+0.5
1,122,378	+	gcvP	LU632_RS05915	0.26	+1.3
1,122,467	-	gcvP	LU632_RS05915	0.29	-0.2
1,122,562	-	gcvP	LU632_RS05915	0.32	-2.6
1,122,562	-	gcvP	LU632_RS05915	0.32	+2.1