Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05095 and LU632_RS05100 are separated by 192 nucleotides LU632_RS05100 and LU632_RS05105 are separated by 10 nucleotides LU632_RS05105 and LU632_RS05110 are separated by 15 nucleotides LU632_RS05110 and LU632_RS05115 are separated by 164 nucleotides LU632_RS05115 and LU632_RS05120 overlap by 1 nucleotides
LU632_RS05095: LU632_RS05095 - hypothetical protein, at 991,228 to 992,061
_RS05095
LU632_RS05100: LU632_RS05100 - hypothetical protein, at 992,254 to 992,616
_RS05100
LU632_RS05105: LU632_RS05105 - DUF4225 domain-containing protein, at 992,627 to 993,478
_RS05105
LU632_RS05110: LU632_RS05110 - type VI secretion system tube protein Hcp, at 993,494 to 993,958
_RS05110
LU632_RS05115: LU632_RS05115 - hypothetical protein, at 994,123 to 994,470
_RS05115
LU632_RS05120: LU632_RS05120 - TIGR03758 family integrating conjugative element protein, at 994,470 to 994,712
_RS05120
Position (kb) 992
993
994 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 991.650 kb on + strand, within LU632_RS05095 at 991.650 kb on + strand, within LU632_RS05095 at 991.767 kb on + strand, within LU632_RS05095 at 991.768 kb on - strand, within LU632_RS05095 at 991.770 kb on + strand, within LU632_RS05095 at 991.770 kb on + strand, within LU632_RS05095 at 991.770 kb on + strand, within LU632_RS05095 at 991.771 kb on - strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.773 kb on - strand, within LU632_RS05095 at 991.773 kb on - strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.777 kb on - strand, within LU632_RS05095 at 991.777 kb on - strand, within LU632_RS05095 at 991.788 kb on + strand, within LU632_RS05095 at 991.855 kb on + strand, within LU632_RS05095 at 991.856 kb on - strand, within LU632_RS05095 at 991.856 kb on - strand, within LU632_RS05095 at 991.869 kb on + strand, within LU632_RS05095 at 991.986 kb on + strand at 991.989 kb on + strand at 991.989 kb on + strand at 991.990 kb on - strand at 991.990 kb on - strand at 991.990 kb on - strand at 992.049 kb on + strand at 992.050 kb on - strand at 992.050 kb on - strand at 992.052 kb on + strand at 992.052 kb on + strand at 992.068 kb on + strand at 992.090 kb on + strand at 992.091 kb on - strand at 992.091 kb on - strand at 992.092 kb on + strand at 992.092 kb on + strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.146 kb on + strand at 992.180 kb on + strand at 992.271 kb on + strand at 992.277 kb on - strand at 992.304 kb on + strand, within LU632_RS05100 at 992.305 kb on - strand, within LU632_RS05100 at 992.336 kb on + strand, within LU632_RS05100 at 992.337 kb on - strand, within LU632_RS05100 at 992.337 kb on - strand, within LU632_RS05100 at 992.429 kb on - strand, within LU632_RS05100 at 992.463 kb on - strand, within LU632_RS05100 at 992.463 kb on - strand, within LU632_RS05100 at 992.463 kb on - strand, within LU632_RS05100 at 992.463 kb on - strand, within LU632_RS05100 at 992.488 kb on + strand, within LU632_RS05100 at 992.489 kb on - strand, within LU632_RS05100 at 992.749 kb on + strand, within LU632_RS05105 at 992.869 kb on - strand, within LU632_RS05105 at 992.899 kb on - strand, within LU632_RS05105 at 992.899 kb on - strand, within LU632_RS05105 at 992.899 kb on - strand, within LU632_RS05105 at 992.920 kb on + strand, within LU632_RS05105 at 992.923 kb on + strand, within LU632_RS05105 at 992.924 kb on - strand, within LU632_RS05105 at 992.924 kb on - strand, within LU632_RS05105 at 992.924 kb on - strand, within LU632_RS05105 at 992.958 kb on + strand, within LU632_RS05105 at 992.959 kb on - strand, within LU632_RS05105 at 992.959 kb on - strand, within LU632_RS05105 at 992.989 kb on - strand, within LU632_RS05105 at 993.013 kb on - strand, within LU632_RS05105 at 993.030 kb on + strand, within LU632_RS05105 at 993.031 kb on - strand, within LU632_RS05105 at 993.044 kb on + strand, within LU632_RS05105 at 993.045 kb on - strand, within LU632_RS05105 at 993.045 kb on - strand, within LU632_RS05105 at 993.045 kb on - strand, within LU632_RS05105 at 993.092 kb on - strand, within LU632_RS05105 at 993.092 kb on - strand, within LU632_RS05105 at 993.157 kb on - strand, within LU632_RS05105 at 993.252 kb on - strand, within LU632_RS05105 at 993.357 kb on + strand, within LU632_RS05105 at 993.432 kb on + strand at 993.432 kb on + strand at 993.432 kb on + strand at 993.432 kb on + strand at 993.432 kb on + strand at 993.433 kb on - strand at 993.433 kb on - strand at 993.433 kb on - strand at 993.433 kb on - strand at 993.462 kb on + strand at 993.462 kb on + strand at 993.466 kb on + strand at 993.467 kb on - strand at 993.467 kb on - strand at 993.467 kb on - strand at 993.502 kb on - strand at 993.502 kb on - strand at 993.504 kb on + strand at 993.504 kb on + strand at 993.505 kb on - strand at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.873 kb on + strand, within LU632_RS05110 at 994.122 kb on + strand at 994.122 kb on + strand at 994.123 kb on - strand at 994.435 kb on + strand, within LU632_RS05115 at 994.435 kb on + strand, within LU632_RS05115 at 994.436 kb on - strand at 994.436 kb on - strand at 994.450 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS) remove 991,650 + LU632_RS05095 0.51 +0.8 991,650 + LU632_RS05095 0.51 -0.3 991,767 + LU632_RS05095 0.65 +1.0 991,768 - LU632_RS05095 0.65 +0.6 991,770 + LU632_RS05095 0.65 -1.1 991,770 + LU632_RS05095 0.65 -0.0 991,770 + LU632_RS05095 0.65 -1.1 991,771 - LU632_RS05095 0.65 +0.4 991,772 + LU632_RS05095 0.65 +1.6 991,772 + LU632_RS05095 0.65 +1.9 991,772 + LU632_RS05095 0.65 +0.7 991,772 + LU632_RS05095 0.65 -0.7 991,772 + LU632_RS05095 0.65 +2.0 991,772 + LU632_RS05095 0.65 +1.9 991,773 - LU632_RS05095 0.65 -0.4 991,773 - LU632_RS05095 0.65 +1.6 991,776 + LU632_RS05095 0.66 +0.7 991,776 + LU632_RS05095 0.66 -1.1 991,776 + LU632_RS05095 0.66 -1.2 991,776 + LU632_RS05095 0.66 -0.8 991,776 + LU632_RS05095 0.66 +1.4 991,777 - LU632_RS05095 0.66 +0.7 991,777 - LU632_RS05095 0.66 -1.2 991,788 + LU632_RS05095 0.67 -0.1 991,855 + LU632_RS05095 0.75 -1.6 991,856 - LU632_RS05095 0.75 -1.6 991,856 - LU632_RS05095 0.75 -0.5 991,869 + LU632_RS05095 0.77 -0.1 991,986 + -3.3 991,989 + -2.3 991,989 + +0.9 991,990 - -1.2 991,990 - +0.8 991,990 - +1.0 992,049 + -0.9 992,050 - +0.8 992,050 - -0.4 992,052 + -0.8 992,052 + -1.4 992,068 + +2.7 992,090 + -1.4 992,091 - -0.0 992,091 - +0.7 992,092 + +1.5 992,092 + -2.5 992,093 - +2.0 992,093 - -1.5 992,093 - -1.4 992,093 - +1.2 992,093 - +0.9 992,146 + +1.3 992,180 + -0.0 992,271 + +0.6 992,277 - -0.5 992,304 + LU632_RS05100 0.14 -1.1 992,305 - LU632_RS05100 0.14 +0.4 992,336 + LU632_RS05100 0.23 +0.1 992,337 - LU632_RS05100 0.23 +0.2 992,337 - LU632_RS05100 0.23 -0.7 992,429 - LU632_RS05100 0.48 +3.8 992,463 - LU632_RS05100 0.58 +1.5 992,463 - LU632_RS05100 0.58 -0.0 992,463 - LU632_RS05100 0.58 +0.8 992,463 - LU632_RS05100 0.58 +0.4 992,488 + LU632_RS05100 0.64 +0.3 992,489 - LU632_RS05100 0.65 -0.9 992,749 + LU632_RS05105 0.14 +0.9 992,869 - LU632_RS05105 0.28 -0.7 992,899 - LU632_RS05105 0.32 +0.1 992,899 - LU632_RS05105 0.32 +0.5 992,899 - LU632_RS05105 0.32 +0.0 992,920 + LU632_RS05105 0.34 -1.1 992,923 + LU632_RS05105 0.35 -0.7 992,924 - LU632_RS05105 0.35 +0.6 992,924 - LU632_RS05105 0.35 +0.6 992,924 - LU632_RS05105 0.35 +0.3 992,958 + LU632_RS05105 0.39 -0.3 992,959 - LU632_RS05105 0.39 -1.5 992,959 - LU632_RS05105 0.39 +2.4 992,989 - LU632_RS05105 0.42 -0.1 993,013 - LU632_RS05105 0.45 -0.1 993,030 + LU632_RS05105 0.47 -1.9 993,031 - LU632_RS05105 0.47 -2.7 993,044 + LU632_RS05105 0.49 +1.4 993,045 - LU632_RS05105 0.49 -2.2 993,045 - LU632_RS05105 0.49 -0.7 993,045 - LU632_RS05105 0.49 +0.6 993,092 - LU632_RS05105 0.55 +0.5 993,092 - LU632_RS05105 0.55 -1.2 993,157 - LU632_RS05105 0.62 -2.1 993,252 - LU632_RS05105 0.73 -1.1 993,357 + LU632_RS05105 0.86 +2.9 993,432 + -0.9 993,432 + +0.6 993,432 + -2.0 993,432 + +1.0 993,432 + -1.1 993,433 - +1.6 993,433 - +1.9 993,433 - +0.9 993,433 - +0.1 993,462 + +1.0 993,462 + +1.7 993,466 + +0.2 993,467 - +0.9 993,467 - -3.0 993,467 - -0.8 993,502 - +0.3 993,502 - +0.3 993,504 + -1.8 993,504 + +0.3 993,505 - +0.5 993,817 - LU632_RS05110 0.69 +0.2 993,817 - LU632_RS05110 0.69 -0.4 993,817 - LU632_RS05110 0.69 -0.9 993,817 - LU632_RS05110 0.69 +1.7 993,817 - LU632_RS05110 0.69 +3.5 993,817 - LU632_RS05110 0.69 -0.5 993,873 + LU632_RS05110 0.82 -2.1 994,122 + +1.2 994,122 + +1.0 994,123 - -2.5 994,435 + LU632_RS05115 0.90 -2.3 994,435 + LU632_RS05115 0.90 +0.9 994,436 - -1.9 994,436 - +1.9 994,450 + -0.5
Or see this region's nucleotide sequence