Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04545 and LU632_RS04550 are separated by 120 nucleotides LU632_RS04550 and LU632_RS04555 are separated by 169 nucleotides LU632_RS04555 and LU632_RS04560 are separated by 104 nucleotides
LU632_RS04545: LU632_RS04545 - hypothetical protein, at 891,176 to 892,093
_RS04545
LU632_RS04550: LU632_RS04550 - DUF2913 family protein, at 892,214 to 892,813
_RS04550
LU632_RS04555: LU632_RS04555 - IS481 family transposase, at 892,983 to 894,023
_RS04555
LU632_RS04560: LU632_RS04560 - Rpn family recombination-promoting nuclease/putative transposase, at 894,128 to 895,066
_RS04560
Position (kb) 892
893
894
895 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 892.018 kb on + strand at 892.018 kb on + strand at 892.153 kb on - strand at 892.194 kb on + strand at 892.194 kb on + strand at 892.194 kb on + strand at 892.195 kb on - strand at 892.195 kb on - strand at 892.195 kb on - strand at 892.195 kb on - strand at 892.195 kb on - strand at 892.196 kb on + strand at 892.207 kb on - strand at 892.511 kb on + strand, within LU632_RS04550 at 892.511 kb on + strand, within LU632_RS04550 at 892.583 kb on + strand, within LU632_RS04550 at 892.619 kb on + strand, within LU632_RS04550 at 892.620 kb on - strand, within LU632_RS04550 at 892.658 kb on + strand, within LU632_RS04550 at 892.672 kb on - strand, within LU632_RS04550 at 892.716 kb on + strand, within LU632_RS04550 at 892.783 kb on + strand at 892.784 kb on - strand at 892.819 kb on - strand at 892.819 kb on - strand at 892.822 kb on + strand at 892.822 kb on + strand at 892.823 kb on - strand at 892.825 kb on - strand at 892.830 kb on - strand at 892.834 kb on - strand at 892.895 kb on + strand at 892.896 kb on - strand at 892.897 kb on + strand at 892.897 kb on + strand at 892.898 kb on - strand at 892.898 kb on - strand at 892.913 kb on - strand at 894.497 kb on - strand, within LU632_RS04560 at 894.587 kb on - strand, within LU632_RS04560 at 894.594 kb on + strand, within LU632_RS04560 at 894.595 kb on - strand, within LU632_RS04560 at 894.675 kb on + strand, within LU632_RS04560 at 894.676 kb on - strand, within LU632_RS04560 at 894.676 kb on - strand, within LU632_RS04560 at 894.690 kb on - strand, within LU632_RS04560 at 894.692 kb on + strand, within LU632_RS04560 at 894.807 kb on - strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.815 kb on - strand, within LU632_RS04560 at 894.815 kb on - strand, within LU632_RS04560 at 894.816 kb on + strand, within LU632_RS04560 at 894.816 kb on + strand, within LU632_RS04560 at 894.816 kb on + strand, within LU632_RS04560 at 894.850 kb on - strand, within LU632_RS04560
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS) remove 892,018 + +2.0 892,018 + -0.5 892,153 - -0.4 892,194 + +1.2 892,194 + +0.0 892,194 + -0.7 892,195 - -2.1 892,195 - -0.7 892,195 - -2.7 892,195 - +0.5 892,195 - +0.0 892,196 + -2.0 892,207 - -0.1 892,511 + LU632_RS04550 0.49 +1.9 892,511 + LU632_RS04550 0.49 +0.3 892,583 + LU632_RS04550 0.61 -3.0 892,619 + LU632_RS04550 0.68 +1.0 892,620 - LU632_RS04550 0.68 -1.6 892,658 + LU632_RS04550 0.74 -2.9 892,672 - LU632_RS04550 0.76 +1.3 892,716 + LU632_RS04550 0.84 +0.3 892,783 + -1.1 892,784 - -0.6 892,819 - -0.9 892,819 - +0.9 892,822 + -0.1 892,822 + +1.5 892,823 - -0.2 892,825 - -0.7 892,830 - -1.1 892,834 - +1.0 892,895 + +0.7 892,896 - +5.2 892,897 + -2.3 892,897 + -2.3 892,898 - -1.3 892,898 - -0.2 892,913 - -0.1 894,497 - LU632_RS04560 0.39 -2.4 894,587 - LU632_RS04560 0.49 +1.0 894,594 + LU632_RS04560 0.50 -0.6 894,595 - LU632_RS04560 0.50 +1.8 894,675 + LU632_RS04560 0.58 +0.1 894,676 - LU632_RS04560 0.58 -2.5 894,676 - LU632_RS04560 0.58 -0.4 894,690 - LU632_RS04560 0.60 +0.2 894,692 + LU632_RS04560 0.60 -0.9 894,807 - LU632_RS04560 0.72 +1.0 894,814 + LU632_RS04560 0.73 -2.1 894,814 + LU632_RS04560 0.73 +0.8 894,814 + LU632_RS04560 0.73 +0.3 894,814 + LU632_RS04560 0.73 -0.2 894,814 + LU632_RS04560 0.73 -1.5 894,815 - LU632_RS04560 0.73 +0.8 894,815 - LU632_RS04560 0.73 +0.3 894,816 + LU632_RS04560 0.73 -1.0 894,816 + LU632_RS04560 0.73 +0.5 894,816 + LU632_RS04560 0.73 +0.9 894,850 - LU632_RS04560 0.77 -1.1
Or see this region's nucleotide sequence