Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03615

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03595 and lysB overlap by 4 nucleotideslysB and lysC overlap by 98 nucleotideslysC and LU632_RS03610 overlap by 38 nucleotidesLU632_RS03610 and LU632_RS03615 overlap by 8 nucleotidesLU632_RS03615 and LU632_RS03620 are separated by 68 nucleotidesLU632_RS03620 and LU632_RS03625 overlap by 4 nucleotides LU632_RS03595: LU632_RS03595 - lysozyme, at 725,530 to 726,039 _RS03595 LU632_RS03600: lysB - Rz-like lysis system protein LysB, at 726,036 to 726,449 lysB LU632_RS03605: lysC - Rz1-like lysis system protein LysC, at 726,352 to 726,594 lysC LU632_RS03610: LU632_RS03610 - phage tail protein, at 726,557 to 727,024 _RS03610 LU632_RS03615: LU632_RS03615 - phage virion morphogenesis protein, at 727,017 to 727,466 _RS03615 LU632_RS03620: LU632_RS03620 - phage baseplate assembly protein V, at 727,535 to 728,170 _RS03620 LU632_RS03625: LU632_RS03625 - GPW/gp25 family protein, at 728,167 to 728,514 _RS03625 Position (kb) 727 728Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 726.043 kb on + strandat 726.043 kb on + strandat 726.044 kb on - strandat 726.110 kb on - strand, within lysBat 726.299 kb on - strand, within lysBat 726.302 kb on + strand, within lysBat 726.330 kb on + strand, within lysBat 726.699 kb on - strand, within LU632_RS03610at 726.699 kb on - strand, within LU632_RS03610at 726.699 kb on - strand, within LU632_RS03610at 726.699 kb on - strand, within LU632_RS03610at 726.793 kb on + strand, within LU632_RS03610at 726.835 kb on + strand, within LU632_RS03610at 726.836 kb on - strand, within LU632_RS03610at 726.927 kb on - strand, within LU632_RS03610at 726.927 kb on - strand, within LU632_RS03610at 726.927 kb on - strand, within LU632_RS03610at 726.935 kb on + strand, within LU632_RS03610at 726.935 kb on + strand, within LU632_RS03610at 726.936 kb on - strand, within LU632_RS03610at 726.986 kb on + strandat 726.987 kb on - strandat 726.987 kb on - strandat 727.009 kb on + strandat 727.009 kb on + strandat 727.010 kb on - strandat 727.027 kb on + strandat 727.260 kb on - strand, within LU632_RS03615at 727.400 kb on - strand, within LU632_RS03615at 727.468 kb on + strandat 727.468 kb on + strandat 727.469 kb on - strandat 727.534 kb on + strandat 727.540 kb on + strandat 727.541 kb on - strandat 727.541 kb on - strandat 727.541 kb on - strandat 727.541 kb on - strandat 727.541 kb on - strandat 727.546 kb on - strandat 727.660 kb on + strand, within LU632_RS03620at 727.660 kb on + strand, within LU632_RS03620at 727.660 kb on + strand, within LU632_RS03620at 727.660 kb on + strand, within LU632_RS03620at 727.661 kb on - strand, within LU632_RS03620at 727.869 kb on - strand, within LU632_RS03620at 727.893 kb on + strand, within LU632_RS03620at 728.101 kb on + strand, within LU632_RS03620at 728.229 kb on + strand, within LU632_RS03625at 728.229 kb on + strand, within LU632_RS03625at 728.230 kb on - strand, within LU632_RS03625at 728.322 kb on + strand, within LU632_RS03625at 728.322 kb on + strand, within LU632_RS03625at 728.323 kb on - strand, within LU632_RS03625at 728.406 kb on + strand, within LU632_RS03625at 728.406 kb on + strand, within LU632_RS03625at 728.406 kb on + strand, within LU632_RS03625at 728.406 kb on + strand, within LU632_RS03625at 728.407 kb on + strand, within LU632_RS03625at 728.407 kb on - strand, within LU632_RS03625at 728.446 kb on + strand, within LU632_RS03625at 728.446 kb on + strand, within LU632_RS03625at 728.446 kb on + strand, within LU632_RS03625at 728.447 kb on - strand, within LU632_RS03625at 728.447 kb on - strand, within LU632_RS03625at 728.447 kb on - strand, within LU632_RS03625at 728.454 kb on + strand, within LU632_RS03625

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
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726,043 + +0.9
726,043 + -0.1
726,044 - -0.7
726,110 - lysB LU632_RS03600 0.18 -2.0
726,299 - lysB LU632_RS03600 0.64 -0.3
726,302 + lysB LU632_RS03600 0.64 +0.9
726,330 + lysB LU632_RS03600 0.71 -2.0
726,699 - LU632_RS03610 0.30 -0.7
726,699 - LU632_RS03610 0.30 +0.3
726,699 - LU632_RS03610 0.30 +1.9
726,699 - LU632_RS03610 0.30 -2.5
726,793 + LU632_RS03610 0.50 -0.2
726,835 + LU632_RS03610 0.59 -0.4
726,836 - LU632_RS03610 0.60 +0.1
726,927 - LU632_RS03610 0.79 +0.8
726,927 - LU632_RS03610 0.79 -1.3
726,927 - LU632_RS03610 0.79 -0.6
726,935 + LU632_RS03610 0.81 +4.2
726,935 + LU632_RS03610 0.81 +0.5
726,936 - LU632_RS03610 0.81 -1.1
726,986 + -0.9
726,987 - +0.9
726,987 - -0.1
727,009 + +0.8
727,009 + -0.1
727,010 - +1.3
727,027 + +1.0
727,260 - LU632_RS03615 0.54 +2.5
727,400 - LU632_RS03615 0.85 +1.6
727,468 + +0.4
727,468 + +0.1
727,469 - -1.4
727,534 + +0.9
727,540 + +0.5
727,541 - -2.0
727,541 - +0.4
727,541 - -2.3
727,541 - +0.2
727,541 - -0.3
727,546 - -1.8
727,660 + LU632_RS03620 0.20 -0.6
727,660 + LU632_RS03620 0.20 +1.7
727,660 + LU632_RS03620 0.20 +0.2
727,660 + LU632_RS03620 0.20 +0.5
727,661 - LU632_RS03620 0.20 +1.3
727,869 - LU632_RS03620 0.53 +1.0
727,893 + LU632_RS03620 0.56 -0.7
728,101 + LU632_RS03620 0.89 +0.2
728,229 + LU632_RS03625 0.18 +1.9
728,229 + LU632_RS03625 0.18 -0.9
728,230 - LU632_RS03625 0.18 -0.7
728,322 + LU632_RS03625 0.45 -0.8
728,322 + LU632_RS03625 0.45 +0.4
728,323 - LU632_RS03625 0.45 -0.7
728,406 + LU632_RS03625 0.69 -0.4
728,406 + LU632_RS03625 0.69 +0.1
728,406 + LU632_RS03625 0.69 -0.7
728,406 + LU632_RS03625 0.69 +1.0
728,407 + LU632_RS03625 0.69 -0.4
728,407 - LU632_RS03625 0.69 -0.1
728,446 + LU632_RS03625 0.80 +1.2
728,446 + LU632_RS03625 0.80 -0.7
728,446 + LU632_RS03625 0.80 -0.4
728,447 - LU632_RS03625 0.80 -2.4
728,447 - LU632_RS03625 0.80 -0.2
728,447 - LU632_RS03625 0.80 -3.7
728,454 + LU632_RS03625 0.82 +1.9

Or see this region's nucleotide sequence