Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03590 and LU632_RS03595 overlap by 17 nucleotides LU632_RS03595 and lysB overlap by 4 nucleotides lysB and lysC overlap by 98 nucleotides lysC and LU632_RS03610 overlap by 38 nucleotides LU632_RS03610 and LU632_RS03615 overlap by 8 nucleotides LU632_RS03615 and LU632_RS03620 are separated by 68 nucleotides
LU632_RS03590: LU632_RS03590 - phage holin family protein, at 725,325 to 725,546
_RS03590
LU632_RS03595: LU632_RS03595 - lysozyme, at 725,530 to 726,039
_RS03595
LU632_RS03600: lysB - Rz-like lysis system protein LysB, at 726,036 to 726,449
lysB
LU632_RS03605: lysC - Rz1-like lysis system protein LysC, at 726,352 to 726,594
lysC
LU632_RS03610: LU632_RS03610 - phage tail protein, at 726,557 to 727,024
_RS03610
LU632_RS03615: LU632_RS03615 - phage virion morphogenesis protein, at 727,017 to 727,466
_RS03615
LU632_RS03620: LU632_RS03620 - phage baseplate assembly protein V, at 727,535 to 728,170
_RS03620
Position (kb) 726
727 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 725.424 kb on + strand, within LU632_RS03590 at 725.425 kb on - strand, within LU632_RS03590 at 725.425 kb on - strand, within LU632_RS03590 at 725.905 kb on + strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.959 kb on + strand, within LU632_RS03595 at 725.959 kb on + strand, within LU632_RS03595 at 726.043 kb on + strand at 726.043 kb on + strand at 726.044 kb on - strand at 726.110 kb on - strand, within lysB at 726.299 kb on - strand, within lysB at 726.302 kb on + strand, within lysB at 726.330 kb on + strand, within lysB at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.793 kb on + strand, within LU632_RS03610 at 726.835 kb on + strand, within LU632_RS03610 at 726.836 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.935 kb on + strand, within LU632_RS03610 at 726.935 kb on + strand, within LU632_RS03610 at 726.936 kb on - strand, within LU632_RS03610 at 726.986 kb on + strand at 726.987 kb on - strand at 726.987 kb on - strand at 727.009 kb on + strand at 727.009 kb on + strand at 727.010 kb on - strand at 727.027 kb on + strand at 727.260 kb on - strand, within LU632_RS03615 at 727.400 kb on - strand, within LU632_RS03615 at 727.468 kb on + strand at 727.468 kb on + strand at 727.469 kb on - strand at 727.534 kb on + strand at 727.540 kb on + strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.546 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS) remove 725,424 + LU632_RS03590 0.45 -0.2 725,425 - LU632_RS03590 0.45 +0.0 725,425 - LU632_RS03590 0.45 -0.9 725,905 + LU632_RS03595 0.74 -0.6 725,906 - LU632_RS03595 0.74 -0.7 725,906 - LU632_RS03595 0.74 +0.3 725,906 - LU632_RS03595 0.74 -4.0 725,959 + LU632_RS03595 0.84 +0.0 725,959 + LU632_RS03595 0.84 -1.3 726,043 + +0.9 726,043 + -0.1 726,044 - -0.7 726,110 - lysB LU632_RS03600 0.18 -2.0 726,299 - lysB LU632_RS03600 0.64 -0.3 726,302 + lysB LU632_RS03600 0.64 +0.9 726,330 + lysB LU632_RS03600 0.71 -2.0 726,699 - LU632_RS03610 0.30 -0.7 726,699 - LU632_RS03610 0.30 +0.3 726,699 - LU632_RS03610 0.30 +1.9 726,699 - LU632_RS03610 0.30 -2.5 726,793 + LU632_RS03610 0.50 -0.2 726,835 + LU632_RS03610 0.59 -0.4 726,836 - LU632_RS03610 0.60 +0.1 726,927 - LU632_RS03610 0.79 +0.8 726,927 - LU632_RS03610 0.79 -1.3 726,927 - LU632_RS03610 0.79 -0.6 726,935 + LU632_RS03610 0.81 +4.2 726,935 + LU632_RS03610 0.81 +0.5 726,936 - LU632_RS03610 0.81 -1.1 726,986 + -0.9 726,987 - +0.9 726,987 - -0.1 727,009 + +0.8 727,009 + -0.1 727,010 - +1.3 727,027 + +1.0 727,260 - LU632_RS03615 0.54 +2.5 727,400 - LU632_RS03615 0.85 +1.6 727,468 + +0.4 727,468 + +0.1 727,469 - -1.4 727,534 + +0.9 727,540 + +0.5 727,541 - -2.0 727,541 - +0.4 727,541 - -2.3 727,541 - +0.2 727,541 - -0.3 727,546 - -1.8
Or see this region's nucleotide sequence