Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03575 and LU632_RS03580 are separated by 93 nucleotides LU632_RS03580 and LU632_RS03585 overlap by 1 nucleotides LU632_RS03585 and LU632_RS03590 overlap by 10 nucleotides LU632_RS03590 and LU632_RS03595 overlap by 17 nucleotides LU632_RS03595 and lysB overlap by 4 nucleotides lysB and lysC overlap by 98 nucleotides
LU632_RS03575: LU632_RS03575 - terminase endonuclease subunit, at 723,779 to 724,528
_RS03575
LU632_RS03580: LU632_RS03580 - head completion/stabilization protein, at 724,622 to 725,131
_RS03580
LU632_RS03585: LU632_RS03585 - tail protein X, at 725,131 to 725,334
_RS03585
LU632_RS03590: LU632_RS03590 - phage holin family protein, at 725,325 to 725,546
_RS03590
LU632_RS03595: LU632_RS03595 - lysozyme, at 725,530 to 726,039
_RS03595
LU632_RS03600: lysB - Rz-like lysis system protein LysB, at 726,036 to 726,449
lysB
LU632_RS03605: lysC - Rz1-like lysis system protein LysC, at 726,352 to 726,594
lysC
Position (kb) 725
726 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 724.447 kb on + strand, within LU632_RS03575 at 724.526 kb on + strand at 724.609 kb on + strand at 724.610 kb on - strand at 724.633 kb on - strand at 724.707 kb on + strand, within LU632_RS03580 at 724.707 kb on + strand, within LU632_RS03580 at 724.708 kb on + strand, within LU632_RS03580 at 724.712 kb on - strand, within LU632_RS03580 at 724.717 kb on + strand, within LU632_RS03580 at 724.944 kb on - strand, within LU632_RS03580 at 724.982 kb on + strand, within LU632_RS03580 at 724.982 kb on + strand, within LU632_RS03580 at 724.983 kb on - strand, within LU632_RS03580 at 725.325 kb on - strand at 725.336 kb on + strand at 725.424 kb on + strand, within LU632_RS03590 at 725.425 kb on - strand, within LU632_RS03590 at 725.425 kb on - strand, within LU632_RS03590 at 725.905 kb on + strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.959 kb on + strand, within LU632_RS03595 at 725.959 kb on + strand, within LU632_RS03595 at 726.043 kb on + strand at 726.043 kb on + strand at 726.044 kb on - strand at 726.110 kb on - strand, within lysB at 726.299 kb on - strand, within lysB at 726.302 kb on + strand, within lysB at 726.330 kb on + strand, within lysB
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS) remove 724,447 + LU632_RS03575 0.89 -0.1 724,526 + +1.1 724,609 + +0.7 724,610 - -0.2 724,633 - -2.8 724,707 + LU632_RS03580 0.17 +1.7 724,707 + LU632_RS03580 0.17 -1.4 724,708 + LU632_RS03580 0.17 +1.0 724,712 - LU632_RS03580 0.18 -1.1 724,717 + LU632_RS03580 0.19 +1.2 724,944 - LU632_RS03580 0.63 +1.9 724,982 + LU632_RS03580 0.71 +0.9 724,982 + LU632_RS03580 0.71 -2.8 724,983 - LU632_RS03580 0.71 -1.6 725,325 - +0.4 725,336 + +1.4 725,424 + LU632_RS03590 0.45 -0.2 725,425 - LU632_RS03590 0.45 +0.0 725,425 - LU632_RS03590 0.45 -0.9 725,905 + LU632_RS03595 0.74 -0.6 725,906 - LU632_RS03595 0.74 -0.7 725,906 - LU632_RS03595 0.74 +0.3 725,906 - LU632_RS03595 0.74 -4.0 725,959 + LU632_RS03595 0.84 +0.0 725,959 + LU632_RS03595 0.84 -1.3 726,043 + +0.9 726,043 + -0.1 726,044 - -0.7 726,110 - lysB LU632_RS03600 0.18 -2.0 726,299 - lysB LU632_RS03600 0.64 -0.3 726,302 + lysB LU632_RS03600 0.64 +0.9 726,330 + lysB LU632_RS03600 0.71 -2.0
Or see this region's nucleotide sequence