Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sctJ and LU632_RS03220 overlap by 8 nucleotides LU632_RS03220 and sctL overlap by 7 nucleotides sctL and LU632_RS03230 are separated by 86 nucleotides LU632_RS03230 and LU632_RS03235 overlap by 14 nucleotides LU632_RS03235 and sctC overlap by 8 nucleotides
LU632_RS03215: sctJ - type III secretion inner membrane ring lipoprotein SctJ, at 657,473 to 658,249
sctJ
LU632_RS03220: LU632_RS03220 - hypothetical protein, at 658,242 to 658,832
_RS03220
LU632_RS03225: sctL - type III secretion system stator protein SctL, at 658,826 to 659,410
sctL
LU632_RS03230: LU632_RS03230 - type III secretion system protein, at 659,497 to 659,733
_RS03230
LU632_RS03235: LU632_RS03235 - type III secretion system protein, at 659,720 to 660,151
_RS03235
LU632_RS03240: sctC - type III secretion system outer membrane ring subunit SctC, at 660,144 to 662,168
sctC
Position (kb) 658
659
660 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 657.928 kb on + strand, within sctJ at 657.931 kb on + strand, within sctJ at 657.931 kb on + strand, within sctJ at 657.932 kb on - strand, within sctJ at 657.973 kb on + strand, within sctJ at 657.974 kb on - strand, within sctJ at 658.061 kb on + strand, within sctJ at 658.062 kb on - strand, within sctJ at 658.099 kb on + strand, within sctJ at 658.099 kb on + strand, within sctJ at 658.099 kb on + strand, within sctJ at 658.100 kb on - strand, within sctJ at 658.100 kb on - strand, within sctJ at 658.148 kb on - strand, within sctJ at 658.182 kb on + strand at 658.183 kb on - strand at 658.667 kb on - strand, within LU632_RS03220 at 658.825 kb on + strand at 658.924 kb on + strand, within sctL at 658.925 kb on - strand, within sctL at 658.925 kb on - strand, within sctL at 658.927 kb on - strand, within sctL at 659.360 kb on + strand at 659.361 kb on - strand at 659.413 kb on - strand at 659.413 kb on - strand at 659.464 kb on - strand at 659.464 kb on - strand at 659.464 kb on - strand at 659.491 kb on - strand at 659.496 kb on + strand at 659.497 kb on - strand at 659.497 kb on - strand at 659.497 kb on - strand at 659.715 kb on + strand at 659.716 kb on - strand at 659.719 kb on - strand at 659.815 kb on - strand, within LU632_RS03235 at 659.872 kb on + strand, within LU632_RS03235 at 659.881 kb on + strand, within LU632_RS03235 at 659.898 kb on + strand, within LU632_RS03235 at 659.898 kb on + strand, within LU632_RS03235 at 659.898 kb on + strand, within LU632_RS03235 at 659.919 kb on + strand, within LU632_RS03235 at 659.919 kb on + strand, within LU632_RS03235 at 659.973 kb on + strand, within LU632_RS03235 at 659.974 kb on - strand, within LU632_RS03235 at 659.974 kb on - strand, within LU632_RS03235 at 659.983 kb on - strand, within LU632_RS03235 at 659.999 kb on - strand, within LU632_RS03235 at 660.127 kb on - strand at 660.130 kb on - strand at 660.158 kb on + strand at 660.158 kb on + strand at 660.158 kb on + strand at 660.158 kb on + strand at 660.158 kb on + strand at 660.159 kb on - strand at 660.159 kb on - strand at 660.253 kb on - strand at 660.258 kb on + strand at 660.272 kb on + strand at 660.289 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS) remove 657,928 + sctJ LU632_RS03215 0.59 +0.1 657,931 + sctJ LU632_RS03215 0.59 -0.6 657,931 + sctJ LU632_RS03215 0.59 -0.2 657,932 - sctJ LU632_RS03215 0.59 -0.8 657,973 + sctJ LU632_RS03215 0.64 +0.4 657,974 - sctJ LU632_RS03215 0.64 +1.5 658,061 + sctJ LU632_RS03215 0.76 +0.5 658,062 - sctJ LU632_RS03215 0.76 +1.5 658,099 + sctJ LU632_RS03215 0.81 -0.4 658,099 + sctJ LU632_RS03215 0.81 +2.2 658,099 + sctJ LU632_RS03215 0.81 +0.9 658,100 - sctJ LU632_RS03215 0.81 +2.2 658,100 - sctJ LU632_RS03215 0.81 -0.9 658,148 - sctJ LU632_RS03215 0.87 +1.4 658,182 + +0.6 658,183 - -2.9 658,667 - LU632_RS03220 0.72 -1.2 658,825 + +0.5 658,924 + sctL LU632_RS03225 0.17 +0.6 658,925 - sctL LU632_RS03225 0.17 -0.5 658,925 - sctL LU632_RS03225 0.17 +0.2 658,927 - sctL LU632_RS03225 0.17 -1.2 659,360 + -2.9 659,361 - -1.6 659,413 - -1.2 659,413 - +0.9 659,464 - -0.6 659,464 - +0.4 659,464 - -1.2 659,491 - -1.8 659,496 + -2.0 659,497 - -2.2 659,497 - -0.5 659,497 - +0.1 659,715 + -0.3 659,716 - -2.6 659,719 - -1.4 659,815 - LU632_RS03235 0.22 -2.7 659,872 + LU632_RS03235 0.35 -1.4 659,881 + LU632_RS03235 0.37 -3.6 659,898 + LU632_RS03235 0.41 -0.2 659,898 + LU632_RS03235 0.41 +5.4 659,898 + LU632_RS03235 0.41 -1.2 659,919 + LU632_RS03235 0.46 -0.2 659,919 + LU632_RS03235 0.46 +1.6 659,973 + LU632_RS03235 0.59 -0.7 659,974 - LU632_RS03235 0.59 -2.3 659,974 - LU632_RS03235 0.59 -0.2 659,983 - LU632_RS03235 0.61 -2.2 659,999 - LU632_RS03235 0.65 +1.2 660,127 - -4.0 660,130 - -1.5 660,158 + -0.5 660,158 + +0.6 660,158 + +0.2 660,158 + -1.5 660,158 + -0.2 660,159 - -0.3 660,159 - +0.8 660,253 - -1.2 660,258 + -1.8 660,272 + -0.1 660,289 + -1.7
Or see this region's nucleotide sequence