Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01230

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS01220 and LU632_RS01225 are separated by 147 nucleotidesLU632_RS01225 and LU632_RS01230 are separated by 56 nucleotidesLU632_RS01230 and LU632_RS01235 are separated by 18 nucleotidesLU632_RS01235 and LU632_RS01240 are separated by 65 nucleotides LU632_RS01220: LU632_RS01220 - hypothetical protein, at 258,457 to 258,972 _RS01220 LU632_RS01225: LU632_RS01225 - hypothetical protein, at 259,120 to 259,800 _RS01225 LU632_RS01230: LU632_RS01230 - hypothetical protein, at 259,857 to 260,045 _RS01230 LU632_RS01235: LU632_RS01235 - FAD-binding protein, at 260,064 to 260,627 _RS01235 LU632_RS01240: LU632_RS01240 - FAD-binding protein, at 260,693 to 261,061 _RS01240 Position (kb) 259 260 261Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 258.859 kb on + strand, within LU632_RS01220at 258.860 kb on - strand, within LU632_RS01220at 258.860 kb on - strand, within LU632_RS01220at 258.863 kb on + strand, within LU632_RS01220at 258.864 kb on - strand, within LU632_RS01220at 258.986 kb on - strandat 259.103 kb on - strandat 259.103 kb on - strandat 259.103 kb on - strandat 259.103 kb on - strandat 259.106 kb on - strandat 259.275 kb on - strand, within LU632_RS01225at 259.282 kb on + strand, within LU632_RS01225at 259.520 kb on + strand, within LU632_RS01225at 259.525 kb on - strand, within LU632_RS01225at 259.525 kb on - strand, within LU632_RS01225at 259.554 kb on + strand, within LU632_RS01225at 259.591 kb on - strand, within LU632_RS01225at 259.619 kb on + strand, within LU632_RS01225at 259.619 kb on + strand, within LU632_RS01225at 259.619 kb on + strand, within LU632_RS01225at 259.624 kb on - strand, within LU632_RS01225at 259.714 kb on + strand, within LU632_RS01225at 259.714 kb on + strand, within LU632_RS01225at 259.714 kb on + strand, within LU632_RS01225at 259.714 kb on + strand, within LU632_RS01225at 259.715 kb on - strand, within LU632_RS01225at 259.715 kb on - strand, within LU632_RS01225at 259.715 kb on - strand, within LU632_RS01225at 259.715 kb on - strand, within LU632_RS01225at 259.715 kb on - strand, within LU632_RS01225at 259.715 kb on - strand, within LU632_RS01225at 259.715 kb on - strand, within LU632_RS01225at 259.734 kb on + strandat 259.877 kb on + strand, within LU632_RS01230at 259.878 kb on - strand, within LU632_RS01230at 259.878 kb on - strand, within LU632_RS01230at 259.880 kb on + strand, within LU632_RS01230at 260.015 kb on + strand, within LU632_RS01230at 260.142 kb on + strand, within LU632_RS01235at 260.143 kb on - strand, within LU632_RS01235at 260.184 kb on - strand, within LU632_RS01235at 260.241 kb on + strand, within LU632_RS01235at 260.241 kb on + strand, within LU632_RS01235at 260.278 kb on + strand, within LU632_RS01235at 260.282 kb on + strand, within LU632_RS01235at 260.282 kb on + strand, within LU632_RS01235at 260.282 kb on + strand, within LU632_RS01235at 260.282 kb on + strand, within LU632_RS01235at 260.283 kb on - strand, within LU632_RS01235at 260.283 kb on - strand, within LU632_RS01235at 260.344 kb on + strand, within LU632_RS01235at 260.375 kb on + strand, within LU632_RS01235at 260.376 kb on - strand, within LU632_RS01235at 260.378 kb on + strand, within LU632_RS01235at 260.379 kb on - strand, within LU632_RS01235at 260.379 kb on - strand, within LU632_RS01235at 260.416 kb on + strand, within LU632_RS01235at 260.416 kb on + strand, within LU632_RS01235at 260.675 kb on + strandat 260.675 kb on + strandat 260.675 kb on + strandat 260.676 kb on - strandat 260.677 kb on + strandat 260.678 kb on - strandat 260.678 kb on - strandat 260.763 kb on - strand, within LU632_RS01240at 260.763 kb on - strand, within LU632_RS01240at 260.763 kb on - strand, within LU632_RS01240at 260.858 kb on - strand, within LU632_RS01240at 260.949 kb on + strand, within LU632_RS01240at 260.990 kb on - strand, within LU632_RS01240at 261.005 kb on - strand, within LU632_RS01240at 261.005 kb on - strand, within LU632_RS01240at 261.008 kb on - strand, within LU632_RS01240

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
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258,859 + LU632_RS01220 0.78 -0.5
258,860 - LU632_RS01220 0.78 +1.2
258,860 - LU632_RS01220 0.78 +0.5
258,863 + LU632_RS01220 0.79 +1.4
258,864 - LU632_RS01220 0.79 +0.2
258,986 - -0.2
259,103 - +0.8
259,103 - +0.1
259,103 - -1.5
259,103 - +0.3
259,106 - +2.5
259,275 - LU632_RS01225 0.23 +0.8
259,282 + LU632_RS01225 0.24 -0.9
259,520 + LU632_RS01225 0.59 -2.3
259,525 - LU632_RS01225 0.59 +1.4
259,525 - LU632_RS01225 0.59 -1.6
259,554 + LU632_RS01225 0.64 -1.1
259,591 - LU632_RS01225 0.69 +1.6
259,619 + LU632_RS01225 0.73 -1.0
259,619 + LU632_RS01225 0.73 -2.1
259,619 + LU632_RS01225 0.73 +0.7
259,624 - LU632_RS01225 0.74 +1.3
259,714 + LU632_RS01225 0.87 -2.2
259,714 + LU632_RS01225 0.87 -0.5
259,714 + LU632_RS01225 0.87 -0.1
259,714 + LU632_RS01225 0.87 -2.2
259,715 - LU632_RS01225 0.87 -2.1
259,715 - LU632_RS01225 0.87 -2.2
259,715 - LU632_RS01225 0.87 +0.4
259,715 - LU632_RS01225 0.87 -1.2
259,715 - LU632_RS01225 0.87 -0.2
259,715 - LU632_RS01225 0.87 -2.0
259,715 - LU632_RS01225 0.87 -0.7
259,734 + -0.9
259,877 + LU632_RS01230 0.11 -1.9
259,878 - LU632_RS01230 0.11 -0.7
259,878 - LU632_RS01230 0.11 -0.8
259,880 + LU632_RS01230 0.12 -0.3
260,015 + LU632_RS01230 0.84 +1.1
260,142 + LU632_RS01235 0.14 +0.3
260,143 - LU632_RS01235 0.14 +1.2
260,184 - LU632_RS01235 0.21 +0.5
260,241 + LU632_RS01235 0.31 -2.3
260,241 + LU632_RS01235 0.31 +0.4
260,278 + LU632_RS01235 0.38 -0.2
260,282 + LU632_RS01235 0.39 -3.9
260,282 + LU632_RS01235 0.39 -1.6
260,282 + LU632_RS01235 0.39 -2.5
260,282 + LU632_RS01235 0.39 -1.5
260,283 - LU632_RS01235 0.39 +0.3
260,283 - LU632_RS01235 0.39 -1.6
260,344 + LU632_RS01235 0.50 -1.2
260,375 + LU632_RS01235 0.55 +0.3
260,376 - LU632_RS01235 0.55 -3.6
260,378 + LU632_RS01235 0.56 +1.9
260,379 - LU632_RS01235 0.56 +1.9
260,379 - LU632_RS01235 0.56 +2.1
260,416 + LU632_RS01235 0.62 +1.3
260,416 + LU632_RS01235 0.62 +0.4
260,675 + -0.6
260,675 + +0.2
260,675 + -0.7
260,676 - +0.5
260,677 + -1.8
260,678 - +0.9
260,678 - +1.6
260,763 - LU632_RS01240 0.19 +1.6
260,763 - LU632_RS01240 0.19 +0.9
260,763 - LU632_RS01240 0.19 -0.5
260,858 - LU632_RS01240 0.45 +0.8
260,949 + LU632_RS01240 0.69 -2.9
260,990 - LU632_RS01240 0.80 -0.7
261,005 - LU632_RS01240 0.85 +0.2
261,005 - LU632_RS01240 0.85 +0.4
261,008 - LU632_RS01240 0.85 +0.3

Or see this region's nucleotide sequence