Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01210 and LU632_RS01215 are separated by 853 nucleotides LU632_RS01215 and LU632_RS01220 are separated by 64 nucleotides LU632_RS01220 and LU632_RS01225 are separated by 147 nucleotides
LU632_RS01210: LU632_RS01210 - anion permease, at 255,405 to 256,841
_RS01210
LU632_RS01215: LU632_RS01215 - IS1 family transposase, at 257,695 to 258,392
_RS01215
LU632_RS01220: LU632_RS01220 - hypothetical protein, at 258,457 to 258,972
_RS01220
LU632_RS01225: LU632_RS01225 - hypothetical protein, at 259,120 to 259,800
_RS01225
Position (kb) 257
258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 256.914 kb on - strand at 256.917 kb on - strand at 256.917 kb on - strand at 256.931 kb on - strand at 256.933 kb on + strand at 256.934 kb on - strand at 256.936 kb on + strand at 256.982 kb on + strand at 257.219 kb on + strand at 257.220 kb on - strand at 257.514 kb on - strand at 257.600 kb on + strand at 257.630 kb on - strand at 258.413 kb on + strand at 258.413 kb on + strand at 258.418 kb on - strand at 258.511 kb on + strand, within LU632_RS01220 at 258.535 kb on - strand, within LU632_RS01220 at 258.546 kb on - strand, within LU632_RS01220 at 258.732 kb on + strand, within LU632_RS01220 at 258.733 kb on - strand, within LU632_RS01220 at 258.859 kb on + strand, within LU632_RS01220 at 258.860 kb on - strand, within LU632_RS01220 at 258.860 kb on - strand, within LU632_RS01220 at 258.863 kb on + strand, within LU632_RS01220 at 258.864 kb on - strand, within LU632_RS01220 at 258.986 kb on - strand at 259.103 kb on - strand at 259.103 kb on - strand at 259.103 kb on - strand at 259.103 kb on - strand at 259.106 kb on - strand at 259.275 kb on - strand, within LU632_RS01225 at 259.282 kb on + strand, within LU632_RS01225
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS) remove 256,914 - +1.9 256,917 - +1.3 256,917 - +1.5 256,931 - +1.3 256,933 + -2.0 256,934 - +0.3 256,936 + -0.3 256,982 + -0.9 257,219 + -0.3 257,220 - +1.2 257,514 - +1.1 257,600 + -1.6 257,630 - +1.2 258,413 + -0.8 258,413 + -2.3 258,418 - +0.4 258,511 + LU632_RS01220 0.10 +1.3 258,535 - LU632_RS01220 0.15 -0.2 258,546 - LU632_RS01220 0.17 +1.2 258,732 + LU632_RS01220 0.53 +0.1 258,733 - LU632_RS01220 0.53 +1.7 258,859 + LU632_RS01220 0.78 -0.4 258,860 - LU632_RS01220 0.78 +1.2 258,860 - LU632_RS01220 0.78 +0.5 258,863 + LU632_RS01220 0.79 +1.4 258,864 - LU632_RS01220 0.79 +0.2 258,986 - -0.1 259,103 - +0.9 259,103 - +0.1 259,103 - -1.4 259,103 - +0.3 259,106 - +2.5 259,275 - LU632_RS01225 0.23 +0.8 259,282 + LU632_RS01225 0.24 -0.9
Or see this region's nucleotide sequence