Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00335

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00330 and LU632_RS00335 are separated by 237 nucleotidesLU632_RS00335 and LU632_RS00340 are separated by 50 nucleotides LU632_RS00330: LU632_RS00330 - dicarboxylate/amino acid:cation symporter, at 69,449 to 70,729 _RS00330 LU632_RS00335: LU632_RS00335 - insulinase family protein, at 70,967 to 72,460 _RS00335 LU632_RS00340: LU632_RS00340 - alpha/beta hydrolase, at 72,511 to 73,386 _RS00340 Position (kb) 70 71 72 73Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 70.066 kb on + strand, within LU632_RS00330at 70.075 kb on + strand, within LU632_RS00330at 70.127 kb on + strand, within LU632_RS00330at 70.128 kb on - strand, within LU632_RS00330at 70.128 kb on - strand, within LU632_RS00330at 70.128 kb on - strand, within LU632_RS00330at 70.128 kb on - strand, within LU632_RS00330at 70.128 kb on - strand, within LU632_RS00330at 70.193 kb on - strand, within LU632_RS00330at 70.213 kb on + strand, within LU632_RS00330at 70.215 kb on + strand, within LU632_RS00330at 70.370 kb on + strand, within LU632_RS00330at 70.370 kb on + strand, within LU632_RS00330at 70.393 kb on + strand, within LU632_RS00330at 70.394 kb on - strand, within LU632_RS00330at 70.582 kb on + strand, within LU632_RS00330at 70.626 kb on + strandat 70.742 kb on - strandat 70.749 kb on + strandat 70.803 kb on - strandat 70.805 kb on + strandat 70.806 kb on - strandat 70.885 kb on - strandat 70.965 kb on - strandat 70.965 kb on - strandat 71.134 kb on + strand, within LU632_RS00335at 71.135 kb on - strand, within LU632_RS00335at 71.154 kb on + strand, within LU632_RS00335at 71.154 kb on + strand, within LU632_RS00335at 71.155 kb on - strand, within LU632_RS00335at 71.159 kb on - strand, within LU632_RS00335at 71.195 kb on + strand, within LU632_RS00335at 71.279 kb on - strand, within LU632_RS00335at 71.279 kb on - strand, within LU632_RS00335at 71.333 kb on + strand, within LU632_RS00335at 71.334 kb on - strand, within LU632_RS00335at 71.336 kb on - strand, within LU632_RS00335at 71.591 kb on + strand, within LU632_RS00335at 71.591 kb on + strand, within LU632_RS00335at 71.592 kb on - strand, within LU632_RS00335at 71.604 kb on - strand, within LU632_RS00335at 71.672 kb on - strand, within LU632_RS00335at 71.771 kb on - strand, within LU632_RS00335at 71.771 kb on - strand, within LU632_RS00335at 71.771 kb on - strand, within LU632_RS00335at 71.958 kb on - strand, within LU632_RS00335at 71.958 kb on - strand, within LU632_RS00335at 71.980 kb on - strand, within LU632_RS00335at 71.995 kb on + strand, within LU632_RS00335at 72.019 kb on + strand, within LU632_RS00335at 72.020 kb on - strand, within LU632_RS00335at 72.131 kb on + strand, within LU632_RS00335at 72.131 kb on + strand, within LU632_RS00335at 72.132 kb on - strand, within LU632_RS00335at 72.132 kb on - strand, within LU632_RS00335at 72.309 kb on + strand, within LU632_RS00335at 72.310 kb on - strand, within LU632_RS00335at 72.614 kb on + strand, within LU632_RS00340at 72.649 kb on + strand, within LU632_RS00340at 72.675 kb on + strand, within LU632_RS00340at 72.693 kb on + strand, within LU632_RS00340at 72.694 kb on - strand, within LU632_RS00340at 72.911 kb on + strand, within LU632_RS00340at 72.954 kb on - strand, within LU632_RS00340at 72.979 kb on - strand, within LU632_RS00340at 72.985 kb on - strand, within LU632_RS00340at 73.116 kb on + strand, within LU632_RS00340at 73.170 kb on + strand, within LU632_RS00340at 73.209 kb on + strand, within LU632_RS00340at 73.210 kb on - strand, within LU632_RS00340at 73.210 kb on - strand, within LU632_RS00340at 73.258 kb on + strand, within LU632_RS00340at 73.372 kb on + strandat 73.419 kb on + strandat 73.420 kb on - strandat 73.420 kb on - strandat 73.420 kb on - strandat 73.420 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
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70,066 + LU632_RS00330 0.48 +0.2
70,075 + LU632_RS00330 0.49 -1.1
70,127 + LU632_RS00330 0.53 -0.1
70,128 - LU632_RS00330 0.53 -1.9
70,128 - LU632_RS00330 0.53 -0.8
70,128 - LU632_RS00330 0.53 -1.4
70,128 - LU632_RS00330 0.53 -1.5
70,128 - LU632_RS00330 0.53 -2.7
70,193 - LU632_RS00330 0.58 -0.4
70,213 + LU632_RS00330 0.60 +0.6
70,215 + LU632_RS00330 0.60 -0.9
70,370 + LU632_RS00330 0.72 -3.5
70,370 + LU632_RS00330 0.72 -1.1
70,393 + LU632_RS00330 0.74 +0.5
70,394 - LU632_RS00330 0.74 -0.3
70,582 + LU632_RS00330 0.88 -0.2
70,626 + -0.4
70,742 - -2.5
70,749 + +0.3
70,803 - -2.5
70,805 + +1.1
70,806 - -0.1
70,885 - -0.4
70,965 - -0.8
70,965 - -0.7
71,134 + LU632_RS00335 0.11 -0.4
71,135 - LU632_RS00335 0.11 +0.3
71,154 + LU632_RS00335 0.13 +0.3
71,154 + LU632_RS00335 0.13 -0.4
71,155 - LU632_RS00335 0.13 -0.2
71,159 - LU632_RS00335 0.13 -0.5
71,195 + LU632_RS00335 0.15 -0.1
71,279 - LU632_RS00335 0.21 -0.6
71,279 - LU632_RS00335 0.21 +0.5
71,333 + LU632_RS00335 0.24 -0.6
71,334 - LU632_RS00335 0.25 -0.6
71,336 - LU632_RS00335 0.25 -1.2
71,591 + LU632_RS00335 0.42 -0.4
71,591 + LU632_RS00335 0.42 +0.5
71,592 - LU632_RS00335 0.42 -0.3
71,604 - LU632_RS00335 0.43 -0.5
71,672 - LU632_RS00335 0.47 -0.4
71,771 - LU632_RS00335 0.54 +0.3
71,771 - LU632_RS00335 0.54 -0.6
71,771 - LU632_RS00335 0.54 -0.2
71,958 - LU632_RS00335 0.66 -0.3
71,958 - LU632_RS00335 0.66 -0.3
71,980 - LU632_RS00335 0.68 -0.1
71,995 + LU632_RS00335 0.69 -0.2
72,019 + LU632_RS00335 0.70 +0.8
72,020 - LU632_RS00335 0.70 +0.7
72,131 + LU632_RS00335 0.78 -0.4
72,131 + LU632_RS00335 0.78 -0.3
72,132 - LU632_RS00335 0.78 -0.1
72,132 - LU632_RS00335 0.78 -0.3
72,309 + LU632_RS00335 0.90 -0.1
72,310 - LU632_RS00335 0.90 -0.5
72,614 + LU632_RS00340 0.12 -0.4
72,649 + LU632_RS00340 0.16 +0.4
72,675 + LU632_RS00340 0.19 -0.4
72,693 + LU632_RS00340 0.21 +0.2
72,694 - LU632_RS00340 0.21 -1.7
72,911 + LU632_RS00340 0.46 +1.4
72,954 - LU632_RS00340 0.51 -0.5
72,979 - LU632_RS00340 0.53 -0.6
72,985 - LU632_RS00340 0.54 +1.4
73,116 + LU632_RS00340 0.69 -0.2
73,170 + LU632_RS00340 0.75 -1.2
73,209 + LU632_RS00340 0.80 +0.2
73,210 - LU632_RS00340 0.80 -0.3
73,210 - LU632_RS00340 0.80 -1.4
73,258 + LU632_RS00340 0.85 +1.8
73,372 + +2.4
73,419 + +2.2
73,420 - -0.5
73,420 - +0.9
73,420 - -3.8
73,420 - +0.7

Or see this region's nucleotide sequence