Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01770 and ABI39_RS22955 overlap by 11 nucleotides ABI39_RS22955 and ABI39_RS01775 are separated by 101 nucleotides ABI39_RS01775 and ABI39_RS01780 are separated by 7 nucleotides
ABI39_RS01770: ABI39_RS01770 - IS1595-like element ISBvu2 family transposase, at 529,193 to 530,116
_RS01770
ABI39_RS22955: ABI39_RS22955 - hypothetical protein, at 530,106 to 530,261
_RS22955
ABI39_RS01775: ABI39_RS01775 - hypothetical protein, at 530,363 to 530,815
_RS01775
ABI39_RS01780: ABI39_RS01780 - hypothetical protein, at 530,823 to 531,341
_RS01780
Position (kb) 530
531 Strain fitness (log2 ratio) -2
-1
0
1 at 529.346 kb on - strand, within ABI39_RS01770 at 529.357 kb on + strand, within ABI39_RS01770 at 529.431 kb on - strand, within ABI39_RS01770 at 529.436 kb on - strand, within ABI39_RS01770 at 529.467 kb on + strand, within ABI39_RS01770 at 529.636 kb on + strand, within ABI39_RS01770 at 529.670 kb on - strand, within ABI39_RS01770 at 529.728 kb on + strand, within ABI39_RS01770 at 529.732 kb on - strand, within ABI39_RS01770 at 529.797 kb on + strand, within ABI39_RS01770 at 529.799 kb on + strand, within ABI39_RS01770 at 529.800 kb on - strand, within ABI39_RS01770 at 529.801 kb on + strand, within ABI39_RS01770 at 529.871 kb on + strand, within ABI39_RS01770 at 529.871 kb on + strand, within ABI39_RS01770 at 529.874 kb on + strand, within ABI39_RS01770 at 529.882 kb on + strand, within ABI39_RS01770 at 529.887 kb on - strand, within ABI39_RS01770 at 529.887 kb on - strand, within ABI39_RS01770 at 529.918 kb on + strand, within ABI39_RS01770 at 529.922 kb on - strand, within ABI39_RS01770 at 529.965 kb on - strand, within ABI39_RS01770 at 529.973 kb on + strand, within ABI39_RS01770 at 529.973 kb on + strand, within ABI39_RS01770 at 529.974 kb on - strand, within ABI39_RS01770 at 529.984 kb on - strand, within ABI39_RS01770 at 529.984 kb on - strand, within ABI39_RS01770 at 530.091 kb on + strand at 530.160 kb on + strand, within ABI39_RS22955 at 530.281 kb on - strand at 530.286 kb on - strand at 530.288 kb on + strand at 530.288 kb on + strand at 530.294 kb on - strand at 530.299 kb on - strand at 530.351 kb on - strand at 530.351 kb on - strand at 530.407 kb on + strand at 530.408 kb on - strand at 530.553 kb on - strand, within ABI39_RS01775 at 530.555 kb on - strand, within ABI39_RS01775 at 530.555 kb on - strand, within ABI39_RS01775 at 530.556 kb on + strand, within ABI39_RS01775 at 530.556 kb on + strand, within ABI39_RS01775 at 530.618 kb on + strand, within ABI39_RS01775 at 530.619 kb on - strand, within ABI39_RS01775 at 530.621 kb on + strand, within ABI39_RS01775 at 530.623 kb on + strand, within ABI39_RS01775 at 530.649 kb on - strand, within ABI39_RS01775 at 530.670 kb on - strand, within ABI39_RS01775 at 530.716 kb on + strand, within ABI39_RS01775 at 530.795 kb on + strand at 530.795 kb on + strand at 530.808 kb on - strand at 530.820 kb on + strand at 530.919 kb on + strand, within ABI39_RS01780 at 530.922 kb on - strand, within ABI39_RS01780 at 530.961 kb on + strand, within ABI39_RS01780 at 531.051 kb on - strand, within ABI39_RS01780 at 531.052 kb on + strand, within ABI39_RS01780 at 531.052 kb on + strand, within ABI39_RS01780 at 531.054 kb on + strand, within ABI39_RS01780 at 531.055 kb on - strand, within ABI39_RS01780 at 531.057 kb on - strand, within ABI39_RS01780 at 531.057 kb on - strand, within ABI39_RS01780 at 531.059 kb on - strand, within ABI39_RS01780 at 531.124 kb on + strand, within ABI39_RS01780 at 531.177 kb on - strand, within ABI39_RS01780
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 529,346 - ABI39_RS01770 0.17 +0.4 529,357 + ABI39_RS01770 0.18 +0.3 529,431 - ABI39_RS01770 0.26 +0.1 529,436 - ABI39_RS01770 0.26 -0.3 529,467 + ABI39_RS01770 0.30 -0.1 529,636 + ABI39_RS01770 0.48 -0.0 529,670 - ABI39_RS01770 0.52 +0.2 529,728 + ABI39_RS01770 0.58 -0.3 529,732 - ABI39_RS01770 0.58 -0.2 529,797 + ABI39_RS01770 0.65 +0.4 529,799 + ABI39_RS01770 0.66 +0.2 529,800 - ABI39_RS01770 0.66 +0.4 529,801 + ABI39_RS01770 0.66 -0.7 529,871 + ABI39_RS01770 0.73 +0.1 529,871 + ABI39_RS01770 0.73 -0.1 529,874 + ABI39_RS01770 0.74 +0.1 529,882 + ABI39_RS01770 0.75 -0.2 529,887 - ABI39_RS01770 0.75 -0.0 529,887 - ABI39_RS01770 0.75 +0.2 529,918 + ABI39_RS01770 0.78 -0.7 529,922 - ABI39_RS01770 0.79 +0.1 529,965 - ABI39_RS01770 0.84 -0.2 529,973 + ABI39_RS01770 0.84 -0.3 529,973 + ABI39_RS01770 0.84 +0.5 529,974 - ABI39_RS01770 0.85 -0.3 529,984 - ABI39_RS01770 0.86 -0.2 529,984 - ABI39_RS01770 0.86 -0.4 530,091 + +0.3 530,160 + ABI39_RS22955 0.35 -1.0 530,281 - +0.2 530,286 - -0.8 530,288 + +0.2 530,288 + +0.7 530,294 - -0.7 530,299 - +0.2 530,351 - +0.2 530,351 - +0.1 530,407 + -0.6 530,408 - +0.1 530,553 - ABI39_RS01775 0.42 -0.3 530,555 - ABI39_RS01775 0.42 -0.0 530,555 - ABI39_RS01775 0.42 -0.2 530,556 + ABI39_RS01775 0.43 +0.1 530,556 + ABI39_RS01775 0.43 +0.0 530,618 + ABI39_RS01775 0.56 -1.8 530,619 - ABI39_RS01775 0.57 +0.5 530,621 + ABI39_RS01775 0.57 -0.1 530,623 + ABI39_RS01775 0.57 -0.1 530,649 - ABI39_RS01775 0.63 -0.8 530,670 - ABI39_RS01775 0.68 -0.5 530,716 + ABI39_RS01775 0.78 -0.6 530,795 + -0.5 530,795 + -0.8 530,808 - +0.4 530,820 + -0.2 530,919 + ABI39_RS01780 0.18 -0.4 530,922 - ABI39_RS01780 0.19 +0.5 530,961 + ABI39_RS01780 0.27 -0.3 531,051 - ABI39_RS01780 0.44 +0.0 531,052 + ABI39_RS01780 0.44 +0.1 531,052 + ABI39_RS01780 0.44 +0.3 531,054 + ABI39_RS01780 0.45 -0.1 531,055 - ABI39_RS01780 0.45 +0.3 531,057 - ABI39_RS01780 0.45 -0.4 531,057 - ABI39_RS01780 0.45 -0.2 531,059 - ABI39_RS01780 0.45 +0.2 531,124 + ABI39_RS01780 0.58 +0.3 531,177 - ABI39_RS01780 0.68 +0.5
Or see this region's nucleotide sequence