Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20615

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS20610 and ABI39_RS20615 are separated by 120 nucleotidesABI39_RS20615 and ABI39_RS20620 are separated by 126 nucleotides ABI39_RS20610: ABI39_RS20610 - SDR family oxidoreductase, at 5,081,194 to 5,082,132 _RS20610 ABI39_RS20615: ABI39_RS20615 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 5,082,253 to 5,083,077 _RS20615 ABI39_RS20620: ABI39_RS20620 - ACP S-malonyltransferase, at 5,083,204 to 5,084,091 _RS20620 Position (kb) 5082 5083 5084Strain fitness (log2 ratio) -2 -1 0 1at 5081.293 kb on - strand, within ABI39_RS20610at 5081.329 kb on + strand, within ABI39_RS20610at 5081.461 kb on - strand, within ABI39_RS20610at 5081.488 kb on + strand, within ABI39_RS20610at 5081.488 kb on + strand, within ABI39_RS20610at 5081.489 kb on - strand, within ABI39_RS20610at 5081.533 kb on + strand, within ABI39_RS20610at 5081.541 kb on + strand, within ABI39_RS20610at 5081.541 kb on + strand, within ABI39_RS20610at 5081.557 kb on + strand, within ABI39_RS20610at 5081.576 kb on - strand, within ABI39_RS20610at 5081.610 kb on - strand, within ABI39_RS20610at 5081.703 kb on - strand, within ABI39_RS20610at 5081.817 kb on + strand, within ABI39_RS20610at 5081.896 kb on + strand, within ABI39_RS20610at 5081.896 kb on + strand, within ABI39_RS20610at 5081.924 kb on + strand, within ABI39_RS20610at 5081.959 kb on + strand, within ABI39_RS20610at 5081.959 kb on + strand, within ABI39_RS20610at 5081.962 kb on - strand, within ABI39_RS20610at 5082.055 kb on - strandat 5082.083 kb on - strandat 5082.096 kb on + strandat 5082.218 kb on + strandat 5082.218 kb on + strandat 5082.250 kb on + strandat 5082.272 kb on + strandat 5082.428 kb on + strand, within ABI39_RS20615at 5082.431 kb on - strand, within ABI39_RS20615at 5082.431 kb on - strand, within ABI39_RS20615at 5082.431 kb on - strand, within ABI39_RS20615at 5082.483 kb on + strand, within ABI39_RS20615at 5082.488 kb on + strand, within ABI39_RS20615at 5082.540 kb on + strand, within ABI39_RS20615at 5082.545 kb on - strand, within ABI39_RS20615at 5082.663 kb on + strand, within ABI39_RS20615at 5082.663 kb on + strand, within ABI39_RS20615at 5082.663 kb on + strand, within ABI39_RS20615at 5082.712 kb on + strand, within ABI39_RS20615at 5082.713 kb on - strand, within ABI39_RS20615at 5082.818 kb on + strand, within ABI39_RS20615at 5082.818 kb on + strand, within ABI39_RS20615at 5083.011 kb on + strandat 5083.095 kb on + strandat 5083.119 kb on + strandat 5083.139 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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5,081,293 - ABI39_RS20610 0.11 -0.1
5,081,329 + ABI39_RS20610 0.14 -0.0
5,081,461 - ABI39_RS20610 0.28 +0.0
5,081,488 + ABI39_RS20610 0.31 +0.4
5,081,488 + ABI39_RS20610 0.31 +0.8
5,081,489 - ABI39_RS20610 0.31 -0.2
5,081,533 + ABI39_RS20610 0.36 -0.6
5,081,541 + ABI39_RS20610 0.37 -0.0
5,081,541 + ABI39_RS20610 0.37 -0.2
5,081,557 + ABI39_RS20610 0.39 -0.2
5,081,576 - ABI39_RS20610 0.41 -1.4
5,081,610 - ABI39_RS20610 0.44 +0.6
5,081,703 - ABI39_RS20610 0.54 +0.1
5,081,817 + ABI39_RS20610 0.66 +0.4
5,081,896 + ABI39_RS20610 0.75 +0.4
5,081,896 + ABI39_RS20610 0.75 -0.4
5,081,924 + ABI39_RS20610 0.78 -0.7
5,081,959 + ABI39_RS20610 0.81 +0.2
5,081,959 + ABI39_RS20610 0.81 +0.1
5,081,962 - ABI39_RS20610 0.82 -0.7
5,082,055 - +0.0
5,082,083 - -0.1
5,082,096 + +0.3
5,082,218 + -0.1
5,082,218 + +0.7
5,082,250 + +1.4
5,082,272 + -2.7
5,082,428 + ABI39_RS20615 0.21 -1.0
5,082,431 - ABI39_RS20615 0.22 -2.7
5,082,431 - ABI39_RS20615 0.22 -2.4
5,082,431 - ABI39_RS20615 0.22 -1.2
5,082,483 + ABI39_RS20615 0.28 -1.2
5,082,488 + ABI39_RS20615 0.28 -1.5
5,082,540 + ABI39_RS20615 0.35 -2.0
5,082,545 - ABI39_RS20615 0.35 -1.8
5,082,663 + ABI39_RS20615 0.50 -1.0
5,082,663 + ABI39_RS20615 0.50 -1.8
5,082,663 + ABI39_RS20615 0.50 -2.2
5,082,712 + ABI39_RS20615 0.56 -2.1
5,082,713 - ABI39_RS20615 0.56 -2.6
5,082,818 + ABI39_RS20615 0.68 -2.2
5,082,818 + ABI39_RS20615 0.68 -1.8
5,083,011 + -0.4
5,083,095 + -0.0
5,083,119 + -0.3
5,083,139 - +0.5

Or see this region's nucleotide sequence