Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS19915 and ABI39_RS19920 overlap by 1 nucleotides ABI39_RS19920 and ABI39_RS19925 are separated by 41 nucleotides ABI39_RS19925 and ABI39_RS19930 are separated by 9 nucleotides ABI39_RS19930 and ABI39_RS19935 are separated by 165 nucleotides
ABI39_RS19915: ABI39_RS19915 - formyltetrahydrofolate deformylase, at 4,924,765 to 4,925,622
_RS19915
ABI39_RS19920: ABI39_RS19920 - imidazole glycerol phosphate synthase subunit HisH, at 4,925,622 to 4,926,212
_RS19920
ABI39_RS19925: ABI39_RS19925 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 4,926,254 to 4,926,973
_RS19925
ABI39_RS19930: ABI39_RS19930 - imidazole glycerol phosphate synthase subunit HisF, at 4,926,983 to 4,927,738
_RS19930
ABI39_RS19935: ABI39_RS19935 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 4,927,904 to 4,928,515
_RS19935
Position (kb) 4926
4927 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 4925.254 kb on - strand, within ABI39_RS19915 at 4925.254 kb on - strand, within ABI39_RS19915 at 4925.282 kb on - strand, within ABI39_RS19915 at 4925.282 kb on - strand, within ABI39_RS19915 at 4925.339 kb on + strand, within ABI39_RS19915 at 4925.340 kb on - strand, within ABI39_RS19915 at 4925.432 kb on - strand, within ABI39_RS19915 at 4925.432 kb on - strand, within ABI39_RS19915 at 4925.461 kb on - strand, within ABI39_RS19915 at 4925.477 kb on + strand, within ABI39_RS19915 at 4925.516 kb on + strand, within ABI39_RS19915 at 4925.661 kb on + strand at 4925.674 kb on - strand at 4925.725 kb on + strand, within ABI39_RS19920 at 4925.846 kb on + strand, within ABI39_RS19920 at 4925.847 kb on - strand, within ABI39_RS19920 at 4925.996 kb on - strand, within ABI39_RS19920 at 4926.046 kb on + strand, within ABI39_RS19920 at 4926.051 kb on - strand, within ABI39_RS19920 at 4926.058 kb on - strand, within ABI39_RS19920 at 4926.098 kb on + strand, within ABI39_RS19920 at 4926.099 kb on - strand, within ABI39_RS19920 at 4926.219 kb on - strand at 4926.223 kb on + strand at 4926.224 kb on - strand at 4926.225 kb on + strand at 4926.227 kb on + strand at 4926.229 kb on + strand at 4926.230 kb on - strand at 4926.233 kb on - strand at 4926.258 kb on + strand at 4926.264 kb on + strand at 4926.265 kb on - strand at 4926.339 kb on - strand, within ABI39_RS19925 at 4926.523 kb on - strand, within ABI39_RS19925 at 4926.724 kb on + strand, within ABI39_RS19925 at 4926.802 kb on - strand, within ABI39_RS19925 at 4926.858 kb on + strand, within ABI39_RS19925 at 4926.868 kb on - strand, within ABI39_RS19925 at 4927.002 kb on + strand at 4927.003 kb on - strand at 4927.060 kb on - strand, within ABI39_RS19930 at 4927.180 kb on - strand, within ABI39_RS19930 at 4927.285 kb on + strand, within ABI39_RS19930 at 4927.436 kb on + strand, within ABI39_RS19930 at 4927.437 kb on - strand, within ABI39_RS19930 at 4927.867 kb on + strand at 4927.881 kb on + strand at 4927.881 kb on + strand at 4927.881 kb on + strand at 4927.883 kb on + strand at 4927.950 kb on + strand at 4927.950 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,925,254 - ABI39_RS19915 0.57 -2.8 4,925,254 - ABI39_RS19915 0.57 -2.4 4,925,282 - ABI39_RS19915 0.60 -1.6 4,925,282 - ABI39_RS19915 0.60 -3.6 4,925,339 + ABI39_RS19915 0.67 -0.3 4,925,340 - ABI39_RS19915 0.67 -2.7 4,925,432 - ABI39_RS19915 0.78 -1.7 4,925,432 - ABI39_RS19915 0.78 -2.7 4,925,461 - ABI39_RS19915 0.81 -2.3 4,925,477 + ABI39_RS19915 0.83 -1.0 4,925,516 + ABI39_RS19915 0.88 +0.2 4,925,661 + -2.8 4,925,674 - -3.8 4,925,725 + ABI39_RS19920 0.17 -3.6 4,925,846 + ABI39_RS19920 0.38 -1.4 4,925,847 - ABI39_RS19920 0.38 -5.1 4,925,996 - ABI39_RS19920 0.63 -4.1 4,926,046 + ABI39_RS19920 0.72 -4.2 4,926,051 - ABI39_RS19920 0.73 -5.7 4,926,058 - ABI39_RS19920 0.74 -4.0 4,926,098 + ABI39_RS19920 0.81 -3.0 4,926,099 - ABI39_RS19920 0.81 -2.6 4,926,219 - -5.6 4,926,223 + +0.0 4,926,224 - -2.7 4,926,225 + +0.1 4,926,227 + -0.1 4,926,229 + -0.1 4,926,230 - -2.5 4,926,233 - -3.2 4,926,258 + -6.1 4,926,264 + -4.9 4,926,265 - -3.4 4,926,339 - ABI39_RS19925 0.12 -5.9 4,926,523 - ABI39_RS19925 0.37 -2.4 4,926,724 + ABI39_RS19925 0.65 -6.2 4,926,802 - ABI39_RS19925 0.76 -3.0 4,926,858 + ABI39_RS19925 0.84 -5.3 4,926,868 - ABI39_RS19925 0.85 -3.1 4,927,002 + -4.9 4,927,003 - -3.2 4,927,060 - ABI39_RS19930 0.10 -3.1 4,927,180 - ABI39_RS19930 0.26 -4.6 4,927,285 + ABI39_RS19930 0.40 -5.3 4,927,436 + ABI39_RS19930 0.60 -4.7 4,927,437 - ABI39_RS19930 0.60 -4.0 4,927,867 + +1.0 4,927,881 + -0.2 4,927,881 + -0.0 4,927,881 + -0.6 4,927,883 + +0.1 4,927,950 + -6.1 4,927,950 + -5.0
Or see this region's nucleotide sequence