Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS17740 and ABI39_RS17745 are separated by 387 nucleotides ABI39_RS17745 and ABI39_RS17750 overlap by 11 nucleotides ABI39_RS17750 and ABI39_RS17755 are separated by 17 nucleotides
ABI39_RS17740: ABI39_RS17740 - superoxide dismutase, at 4,480,556 to 4,481,137
_RS17740
ABI39_RS17745: ABI39_RS17745 - sulfur carrier protein ThiS, at 4,481,525 to 4,481,725
_RS17745
ABI39_RS17750: ABI39_RS17750 - thiamine phosphate synthase, at 4,481,715 to 4,482,341
_RS17750
ABI39_RS17755: ABI39_RS17755 - thiazole synthase, at 4,482,359 to 4,483,132
_RS17755
Position (kb) 4481
4482 Strain fitness (log2 ratio) -2
-1
0
1 at 4480.527 kb on + strand at 4480.531 kb on - strand at 4480.627 kb on - strand, within ABI39_RS17740 at 4480.631 kb on + strand, within ABI39_RS17740 at 4480.658 kb on + strand, within ABI39_RS17740 at 4480.771 kb on - strand, within ABI39_RS17740 at 4480.780 kb on + strand, within ABI39_RS17740 at 4480.787 kb on + strand, within ABI39_RS17740 at 4480.787 kb on + strand, within ABI39_RS17740 at 4480.840 kb on - strand, within ABI39_RS17740 at 4481.035 kb on - strand, within ABI39_RS17740 at 4481.048 kb on + strand, within ABI39_RS17740 at 4481.049 kb on - strand, within ABI39_RS17740 at 4481.051 kb on + strand, within ABI39_RS17740 at 4481.160 kb on + strand at 4481.403 kb on + strand at 4481.519 kb on + strand at 4481.520 kb on - strand at 4481.656 kb on - strand, within ABI39_RS17745 at 4481.677 kb on - strand, within ABI39_RS17745 at 4481.766 kb on + strand at 4481.766 kb on + strand at 4481.775 kb on + strand at 4481.885 kb on - strand, within ABI39_RS17750 at 4482.056 kb on - strand, within ABI39_RS17750 at 4482.224 kb on + strand, within ABI39_RS17750 at 4482.375 kb on + strand at 4482.376 kb on - strand at 4482.419 kb on - strand at 4482.553 kb on - strand, within ABI39_RS17755
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,480,527 + -0.3 4,480,531 - +0.4 4,480,627 - ABI39_RS17740 0.12 +0.9 4,480,631 + ABI39_RS17740 0.13 -0.6 4,480,658 + ABI39_RS17740 0.18 +0.3 4,480,771 - ABI39_RS17740 0.37 +0.5 4,480,780 + ABI39_RS17740 0.38 +0.1 4,480,787 + ABI39_RS17740 0.40 +0.1 4,480,787 + ABI39_RS17740 0.40 +0.1 4,480,840 - ABI39_RS17740 0.49 +0.3 4,481,035 - ABI39_RS17740 0.82 -0.7 4,481,048 + ABI39_RS17740 0.85 -0.1 4,481,049 - ABI39_RS17740 0.85 +0.4 4,481,051 + ABI39_RS17740 0.85 -0.2 4,481,160 + +0.2 4,481,403 + -0.2 4,481,519 + -0.5 4,481,520 - -1.5 4,481,656 - ABI39_RS17745 0.65 -1.3 4,481,677 - ABI39_RS17745 0.76 -1.7 4,481,766 + -1.3 4,481,766 + -2.2 4,481,775 + -1.4 4,481,885 - ABI39_RS17750 0.27 -1.9 4,482,056 - ABI39_RS17750 0.54 -2.1 4,482,224 + ABI39_RS17750 0.81 -1.5 4,482,375 + -1.2 4,482,376 - -2.6 4,482,419 - -1.0 4,482,553 - ABI39_RS17755 0.25 -1.1
Or see this region's nucleotide sequence