Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03030 and ABI39_RS03035 are separated by 148 nucleotides ABI39_RS03035 and ABI39_RS03040 are separated by 7 nucleotides
ABI39_RS03030: ABI39_RS03030 - response regulator, at 882,229 to 886,389
_RS03030
ABI39_RS03035: ABI39_RS03035 - AraC family transcriptional regulator, at 886,538 to 887,458
_RS03035
ABI39_RS03040: ABI39_RS03040 - lytic transglycosylase domain-containing protein, at 887,466 to 888,464
_RS03040
Position (kb) 886
887
888 Strain fitness (log2 ratio) -1
0
1 at 885.652 kb on - strand, within ABI39_RS03030 at 885.673 kb on + strand, within ABI39_RS03030 at 885.715 kb on - strand, within ABI39_RS03030 at 885.720 kb on - strand, within ABI39_RS03030 at 885.739 kb on - strand, within ABI39_RS03030 at 885.808 kb on + strand, within ABI39_RS03030 at 885.959 kb on - strand, within ABI39_RS03030 at 885.982 kb on + strand at 885.983 kb on - strand at 885.983 kb on - strand at 885.983 kb on - strand at 885.987 kb on - strand at 885.988 kb on + strand at 886.003 kb on - strand at 886.060 kb on - strand at 886.092 kb on - strand at 886.094 kb on - strand at 886.101 kb on + strand at 886.102 kb on - strand at 886.133 kb on + strand at 886.149 kb on + strand at 886.150 kb on - strand at 886.222 kb on - strand at 886.233 kb on + strand at 886.281 kb on - strand at 886.281 kb on - strand at 886.283 kb on - strand at 886.382 kb on + strand at 886.424 kb on + strand at 886.438 kb on + strand at 886.497 kb on + strand at 886.498 kb on - strand at 886.544 kb on + strand at 886.576 kb on - strand at 886.722 kb on - strand, within ABI39_RS03035 at 886.734 kb on - strand, within ABI39_RS03035 at 886.768 kb on + strand, within ABI39_RS03035 at 886.788 kb on + strand, within ABI39_RS03035 at 886.793 kb on - strand, within ABI39_RS03035 at 886.897 kb on - strand, within ABI39_RS03035 at 886.998 kb on + strand, within ABI39_RS03035 at 887.166 kb on + strand, within ABI39_RS03035 at 887.167 kb on - strand, within ABI39_RS03035 at 887.235 kb on - strand, within ABI39_RS03035 at 887.329 kb on - strand, within ABI39_RS03035 at 887.333 kb on + strand, within ABI39_RS03035 at 887.347 kb on + strand, within ABI39_RS03035 at 887.413 kb on + strand at 887.476 kb on + strand at 887.516 kb on - strand at 887.552 kb on + strand at 887.576 kb on + strand, within ABI39_RS03040 at 887.577 kb on - strand, within ABI39_RS03040 at 887.583 kb on - strand, within ABI39_RS03040 at 887.587 kb on + strand, within ABI39_RS03040 at 887.599 kb on + strand, within ABI39_RS03040 at 887.785 kb on + strand, within ABI39_RS03040 at 887.825 kb on + strand, within ABI39_RS03040 at 888.021 kb on + strand, within ABI39_RS03040 at 888.024 kb on - strand, within ABI39_RS03040 at 888.378 kb on + strand at 888.415 kb on - strand at 888.415 kb on - strand at 888.457 kb on + strand at 888.457 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 885,652 - ABI39_RS03030 0.82 +0.0 885,673 + ABI39_RS03030 0.83 -0.1 885,715 - ABI39_RS03030 0.84 +0.1 885,720 - ABI39_RS03030 0.84 -0.1 885,739 - ABI39_RS03030 0.84 +0.2 885,808 + ABI39_RS03030 0.86 -0.1 885,959 - ABI39_RS03030 0.90 -0.7 885,982 + +0.3 885,983 - +0.1 885,983 - -0.4 885,983 - +0.1 885,987 - +0.2 885,988 + -0.0 886,003 - -0.2 886,060 - +0.1 886,092 - +0.0 886,094 - -0.1 886,101 + +0.2 886,102 - +0.1 886,133 + +0.6 886,149 + -0.1 886,150 - -0.2 886,222 - -0.5 886,233 + -0.4 886,281 - -0.3 886,281 - -0.1 886,283 - -1.3 886,382 + -0.1 886,424 + +0.7 886,438 + -0.0 886,497 + -0.1 886,498 - +0.0 886,544 + +0.0 886,576 - +0.3 886,722 - ABI39_RS03035 0.20 +0.5 886,734 - ABI39_RS03035 0.21 +0.7 886,768 + ABI39_RS03035 0.25 +0.2 886,788 + ABI39_RS03035 0.27 +0.0 886,793 - ABI39_RS03035 0.28 -0.2 886,897 - ABI39_RS03035 0.39 +0.6 886,998 + ABI39_RS03035 0.50 -0.1 887,166 + ABI39_RS03035 0.68 +0.1 887,167 - ABI39_RS03035 0.68 -0.4 887,235 - ABI39_RS03035 0.76 +0.2 887,329 - ABI39_RS03035 0.86 -0.0 887,333 + ABI39_RS03035 0.86 -0.2 887,347 + ABI39_RS03035 0.88 -0.9 887,413 + +0.2 887,476 + -1.0 887,516 - +0.5 887,552 + +0.3 887,576 + ABI39_RS03040 0.11 +0.2 887,577 - ABI39_RS03040 0.11 -0.1 887,583 - ABI39_RS03040 0.12 +0.1 887,587 + ABI39_RS03040 0.12 -0.1 887,599 + ABI39_RS03040 0.13 -0.2 887,785 + ABI39_RS03040 0.32 -0.0 887,825 + ABI39_RS03040 0.36 -0.5 888,021 + ABI39_RS03040 0.56 +0.2 888,024 - ABI39_RS03040 0.56 -0.3 888,378 + +0.0 888,415 - +0.5 888,415 - +0.1 888,457 + -0.2 888,457 + -0.0
Or see this region's nucleotide sequence