Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS02970

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS02965 and ABI39_RS02970 are separated by 13 nucleotidesABI39_RS02970 and ABI39_RS02975 are separated by 5 nucleotides ABI39_RS02965: ABI39_RS02965 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 865,172 to 866,296 _RS02965 ABI39_RS02970: ABI39_RS02970 - N-acetyl-gamma-glutamyl-phosphate reductase, at 866,310 to 867,278 _RS02970 ABI39_RS02975: ABI39_RS02975 - argininosuccinate synthase, at 867,284 to 868,492 _RS02975 Position (kb) 866 867 868Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 865.416 kb on - strand, within ABI39_RS02965at 865.524 kb on + strand, within ABI39_RS02965at 865.601 kb on + strand, within ABI39_RS02965at 865.667 kb on + strand, within ABI39_RS02965at 865.712 kb on - strand, within ABI39_RS02965at 865.768 kb on + strand, within ABI39_RS02965at 865.827 kb on - strand, within ABI39_RS02965at 865.846 kb on - strand, within ABI39_RS02965at 865.880 kb on - strand, within ABI39_RS02965at 866.018 kb on + strand, within ABI39_RS02965at 866.044 kb on - strand, within ABI39_RS02965at 866.084 kb on + strand, within ABI39_RS02965at 866.151 kb on + strand, within ABI39_RS02965at 866.154 kb on + strand, within ABI39_RS02965at 866.154 kb on + strand, within ABI39_RS02965at 866.375 kb on + strandat 866.539 kb on + strand, within ABI39_RS02970at 866.542 kb on + strand, within ABI39_RS02970at 866.601 kb on - strand, within ABI39_RS02970at 866.646 kb on + strand, within ABI39_RS02970at 866.726 kb on - strand, within ABI39_RS02970at 866.735 kb on + strand, within ABI39_RS02970at 866.736 kb on - strand, within ABI39_RS02970at 866.871 kb on - strand, within ABI39_RS02970at 866.947 kb on + strand, within ABI39_RS02970at 867.036 kb on - strand, within ABI39_RS02970at 867.144 kb on + strand, within ABI39_RS02970at 867.145 kb on - strand, within ABI39_RS02970at 867.145 kb on - strand, within ABI39_RS02970at 867.159 kb on - strand, within ABI39_RS02970at 867.183 kb on + strandat 867.192 kb on + strandat 867.198 kb on + strandat 867.260 kb on + strandat 867.278 kb on + strandat 867.310 kb on + strandat 867.315 kb on + strandat 867.445 kb on + strand, within ABI39_RS02975at 867.475 kb on + strand, within ABI39_RS02975at 867.493 kb on + strand, within ABI39_RS02975at 867.950 kb on + strand, within ABI39_RS02975at 867.956 kb on - strand, within ABI39_RS02975at 868.155 kb on - strand, within ABI39_RS02975at 868.221 kb on + strand, within ABI39_RS02975at 868.222 kb on - strand, within ABI39_RS02975at 868.222 kb on - strand, within ABI39_RS02975at 868.225 kb on + strand, within ABI39_RS02975

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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865,416 - ABI39_RS02965 0.22 -3.5
865,524 + ABI39_RS02965 0.31 -4.2
865,601 + ABI39_RS02965 0.38 -4.5
865,667 + ABI39_RS02965 0.44 -3.3
865,712 - ABI39_RS02965 0.48 -4.1
865,768 + ABI39_RS02965 0.53 -3.5
865,827 - ABI39_RS02965 0.58 -4.7
865,846 - ABI39_RS02965 0.60 -3.6
865,880 - ABI39_RS02965 0.63 -3.3
866,018 + ABI39_RS02965 0.75 -3.3
866,044 - ABI39_RS02965 0.78 -3.0
866,084 + ABI39_RS02965 0.81 -2.6
866,151 + ABI39_RS02965 0.87 -3.8
866,154 + ABI39_RS02965 0.87 -3.6
866,154 + ABI39_RS02965 0.87 -3.7
866,375 + -2.2
866,539 + ABI39_RS02970 0.24 -3.7
866,542 + ABI39_RS02970 0.24 -4.5
866,601 - ABI39_RS02970 0.30 -5.1
866,646 + ABI39_RS02970 0.35 -4.5
866,726 - ABI39_RS02970 0.43 -5.4
866,735 + ABI39_RS02970 0.44 -5.7
866,736 - ABI39_RS02970 0.44 -4.8
866,871 - ABI39_RS02970 0.58 -5.2
866,947 + ABI39_RS02970 0.66 -3.5
867,036 - ABI39_RS02970 0.75 -3.7
867,144 + ABI39_RS02970 0.86 -5.1
867,145 - ABI39_RS02970 0.86 -4.4
867,145 - ABI39_RS02970 0.86 -3.3
867,159 - ABI39_RS02970 0.88 -4.6
867,183 + -5.6
867,192 + -5.3
867,198 + -3.0
867,260 + -4.7
867,278 + -4.8
867,310 + -5.4
867,315 + -3.7
867,445 + ABI39_RS02975 0.13 -5.1
867,475 + ABI39_RS02975 0.16 -6.1
867,493 + ABI39_RS02975 0.17 -4.8
867,950 + ABI39_RS02975 0.55 -4.9
867,956 - ABI39_RS02975 0.56 -4.9
868,155 - ABI39_RS02975 0.72 -4.4
868,221 + ABI39_RS02975 0.78 -3.9
868,222 - ABI39_RS02975 0.78 -5.3
868,222 - ABI39_RS02975 0.78 -5.7
868,225 + ABI39_RS02975 0.78 -4.6

Or see this region's nucleotide sequence