Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02470 and ABI39_RS02475 are separated by 1 nucleotides ABI39_RS02475 and ABI39_RS02480 overlap by 4 nucleotides ABI39_RS02480 and ABI39_RS02485 are separated by 3 nucleotides ABI39_RS02485 and ABI39_RS02490 are separated by 9 nucleotides
ABI39_RS02470: ABI39_RS02470 - ATP-dependent DNA helicase RecG, at 704,764 to 706,860
_RS02470
ABI39_RS02475: ABI39_RS02475 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 706,862 to 707,521
_RS02475
ABI39_RS02480: ABI39_RS02480 - DJ-1/PfpI family protein, at 707,518 to 708,069
_RS02480
ABI39_RS02485: ABI39_RS02485 - TonB family protein, at 708,073 to 708,966
_RS02485
ABI39_RS02490: ABI39_RS02490 - biopolymer transporter ExbD, at 708,976 to 709,395
_RS02490
Position (kb) 707
708
709 Strain fitness (log2 ratio) -2
-1
0
1 at 706.538 kb on + strand, within ABI39_RS02470 at 706.710 kb on - strand at 706.834 kb on + strand at 706.846 kb on - strand at 706.910 kb on - strand at 706.922 kb on - strand at 706.994 kb on - strand, within ABI39_RS02475 at 706.995 kb on + strand, within ABI39_RS02475 at 707.178 kb on - strand, within ABI39_RS02475 at 707.244 kb on + strand, within ABI39_RS02475 at 707.374 kb on + strand, within ABI39_RS02475 at 707.377 kb on + strand, within ABI39_RS02475 at 707.377 kb on + strand, within ABI39_RS02475 at 707.378 kb on - strand, within ABI39_RS02475 at 707.378 kb on - strand, within ABI39_RS02475 at 707.381 kb on + strand, within ABI39_RS02475 at 707.382 kb on - strand, within ABI39_RS02475 at 707.501 kb on + strand at 707.666 kb on + strand, within ABI39_RS02480 at 707.806 kb on + strand, within ABI39_RS02480 at 707.866 kb on + strand, within ABI39_RS02480 at 707.894 kb on - strand, within ABI39_RS02480 at 708.092 kb on + strand at 708.096 kb on + strand at 708.096 kb on + strand at 708.198 kb on + strand, within ABI39_RS02485 at 708.214 kb on - strand, within ABI39_RS02485 at 708.214 kb on - strand, within ABI39_RS02485 at 708.217 kb on - strand, within ABI39_RS02485 at 708.242 kb on - strand, within ABI39_RS02485 at 708.250 kb on - strand, within ABI39_RS02485 at 708.636 kb on + strand, within ABI39_RS02485 at 708.799 kb on - strand, within ABI39_RS02485 at 708.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 706,538 + ABI39_RS02470 0.85 -1.0 706,710 - -1.7 706,834 + +0.1 706,846 - -1.2 706,910 - -0.4 706,922 - -0.0 706,994 - ABI39_RS02475 0.20 -0.2 706,995 + ABI39_RS02475 0.20 -2.6 707,178 - ABI39_RS02475 0.48 -0.1 707,244 + ABI39_RS02475 0.58 -1.5 707,374 + ABI39_RS02475 0.78 -1.6 707,377 + ABI39_RS02475 0.78 +0.0 707,377 + ABI39_RS02475 0.78 -2.5 707,378 - ABI39_RS02475 0.78 -1.2 707,378 - ABI39_RS02475 0.78 -0.0 707,381 + ABI39_RS02475 0.79 -2.3 707,382 - ABI39_RS02475 0.79 -0.5 707,501 + -2.2 707,666 + ABI39_RS02480 0.27 -1.6 707,806 + ABI39_RS02480 0.52 -2.1 707,866 + ABI39_RS02480 0.63 -1.5 707,894 - ABI39_RS02480 0.68 -0.8 708,092 + -1.4 708,096 + -1.4 708,096 + -0.9 708,198 + ABI39_RS02485 0.14 -0.3 708,214 - ABI39_RS02485 0.16 +0.0 708,214 - ABI39_RS02485 0.16 -0.2 708,217 - ABI39_RS02485 0.16 -0.7 708,242 - ABI39_RS02485 0.19 -0.0 708,250 - ABI39_RS02485 0.20 +0.2 708,636 + ABI39_RS02485 0.63 -0.7 708,799 - ABI39_RS02485 0.81 +0.4 708,950 - +0.1
Or see this region's nucleotide sequence