Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02460 and ABI39_RS02465 are separated by 20 nucleotides ABI39_RS02465 and ABI39_RS02470 are separated by 221 nucleotides ABI39_RS02470 and ABI39_RS02475 are separated by 1 nucleotides ABI39_RS02475 and ABI39_RS02480 overlap by 4 nucleotides
ABI39_RS02460: ABI39_RS02460 - peptidoglycan DD-metalloendopeptidase family protein, at 703,170 to 704,057
_RS02460
ABI39_RS02465: ABI39_RS02465 - nucleoside-diphosphate kinase, at 704,078 to 704,542
_RS02465
ABI39_RS02470: ABI39_RS02470 - ATP-dependent DNA helicase RecG, at 704,764 to 706,860
_RS02470
ABI39_RS02475: ABI39_RS02475 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 706,862 to 707,521
_RS02475
ABI39_RS02480: ABI39_RS02480 - DJ-1/PfpI family protein, at 707,518 to 708,069
_RS02480
Position (kb) 704
705
706
707 Strain fitness (log2 ratio) -2
-1
0
1 at 704.098 kb on - strand at 704.159 kb on - strand, within ABI39_RS02465 at 704.292 kb on - strand, within ABI39_RS02465 at 704.543 kb on - strand at 704.892 kb on - strand at 705.433 kb on + strand, within ABI39_RS02470 at 705.535 kb on + strand, within ABI39_RS02470 at 705.551 kb on + strand, within ABI39_RS02470 at 705.551 kb on + strand, within ABI39_RS02470 at 705.708 kb on + strand, within ABI39_RS02470 at 705.734 kb on - strand, within ABI39_RS02470 at 705.897 kb on + strand, within ABI39_RS02470 at 706.030 kb on + strand, within ABI39_RS02470 at 706.175 kb on + strand, within ABI39_RS02470 at 706.175 kb on + strand, within ABI39_RS02470 at 706.175 kb on + strand, within ABI39_RS02470 at 706.176 kb on - strand, within ABI39_RS02470 at 706.273 kb on + strand, within ABI39_RS02470 at 706.412 kb on + strand, within ABI39_RS02470 at 706.538 kb on + strand, within ABI39_RS02470 at 706.710 kb on - strand at 706.834 kb on + strand at 706.846 kb on - strand at 706.910 kb on - strand at 706.922 kb on - strand at 706.994 kb on - strand, within ABI39_RS02475 at 706.995 kb on + strand, within ABI39_RS02475 at 707.178 kb on - strand, within ABI39_RS02475 at 707.244 kb on + strand, within ABI39_RS02475 at 707.374 kb on + strand, within ABI39_RS02475 at 707.377 kb on + strand, within ABI39_RS02475 at 707.377 kb on + strand, within ABI39_RS02475 at 707.378 kb on - strand, within ABI39_RS02475 at 707.378 kb on - strand, within ABI39_RS02475 at 707.381 kb on + strand, within ABI39_RS02475 at 707.382 kb on - strand, within ABI39_RS02475 at 707.501 kb on + strand at 707.666 kb on + strand, within ABI39_RS02480 at 707.806 kb on + strand, within ABI39_RS02480
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 704,098 - +0.0 704,159 - ABI39_RS02465 0.17 +1.6 704,292 - ABI39_RS02465 0.46 -0.0 704,543 - +0.3 704,892 - -1.1 705,433 + ABI39_RS02470 0.32 -1.1 705,535 + ABI39_RS02470 0.37 -1.4 705,551 + ABI39_RS02470 0.38 -2.6 705,551 + ABI39_RS02470 0.38 -0.3 705,708 + ABI39_RS02470 0.45 -1.1 705,734 - ABI39_RS02470 0.46 -0.4 705,897 + ABI39_RS02470 0.54 -0.5 706,030 + ABI39_RS02470 0.60 -1.7 706,175 + ABI39_RS02470 0.67 +0.0 706,175 + ABI39_RS02470 0.67 -0.8 706,175 + ABI39_RS02470 0.67 +0.3 706,176 - ABI39_RS02470 0.67 -2.2 706,273 + ABI39_RS02470 0.72 -1.2 706,412 + ABI39_RS02470 0.79 -1.5 706,538 + ABI39_RS02470 0.85 -1.0 706,710 - -1.7 706,834 + +0.1 706,846 - -1.2 706,910 - -0.4 706,922 - -0.0 706,994 - ABI39_RS02475 0.20 -0.2 706,995 + ABI39_RS02475 0.20 -2.6 707,178 - ABI39_RS02475 0.48 -0.1 707,244 + ABI39_RS02475 0.58 -1.5 707,374 + ABI39_RS02475 0.78 -1.6 707,377 + ABI39_RS02475 0.78 +0.0 707,377 + ABI39_RS02475 0.78 -2.5 707,378 - ABI39_RS02475 0.78 -1.2 707,378 - ABI39_RS02475 0.78 -0.0 707,381 + ABI39_RS02475 0.79 -2.3 707,382 - ABI39_RS02475 0.79 -0.5 707,501 + -2.2 707,666 + ABI39_RS02480 0.27 -1.6 707,806 + ABI39_RS02480 0.52 -2.1
Or see this region's nucleotide sequence