Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS02315

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS02310 and ABI39_RS02315 are separated by 13 nucleotidesABI39_RS02315 and ABI39_RS02320 are separated by 297 nucleotides ABI39_RS02310: ABI39_RS02310 - peptidylprolyl isomerase, at 671,643 to 672,980 _RS02310 ABI39_RS02315: ABI39_RS02315 - IMP dehydrogenase, at 672,994 to 674,469 _RS02315 ABI39_RS02320: ABI39_RS02320 - DNA helicase RecQ, at 674,767 to 676,947 _RS02320 Position (kb) 672 673 674 675Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 672.035 kb on + strand, within ABI39_RS02310at 672.090 kb on - strand, within ABI39_RS02310at 672.186 kb on + strand, within ABI39_RS02310at 672.277 kb on - strand, within ABI39_RS02310at 672.331 kb on - strand, within ABI39_RS02310at 672.375 kb on - strand, within ABI39_RS02310at 672.398 kb on + strand, within ABI39_RS02310at 672.398 kb on + strand, within ABI39_RS02310at 672.417 kb on - strand, within ABI39_RS02310at 672.634 kb on - strand, within ABI39_RS02310at 672.657 kb on + strand, within ABI39_RS02310at 672.782 kb on - strand, within ABI39_RS02310at 672.797 kb on + strand, within ABI39_RS02310at 672.816 kb on + strand, within ABI39_RS02310at 672.897 kb on - strandat 673.010 kb on + strandat 673.010 kb on + strandat 673.010 kb on + strandat 673.010 kb on + strandat 673.010 kb on + strandat 673.015 kb on - strandat 673.026 kb on + strandat 673.109 kb on - strandat 673.109 kb on - strandat 673.109 kb on - strandat 673.163 kb on + strand, within ABI39_RS02315at 673.189 kb on - strand, within ABI39_RS02315at 673.421 kb on - strand, within ABI39_RS02315at 673.496 kb on + strand, within ABI39_RS02315at 673.496 kb on + strand, within ABI39_RS02315at 673.496 kb on + strand, within ABI39_RS02315at 673.497 kb on - strand, within ABI39_RS02315at 673.497 kb on - strand, within ABI39_RS02315at 673.551 kb on + strand, within ABI39_RS02315at 673.632 kb on + strand, within ABI39_RS02315at 673.858 kb on - strand, within ABI39_RS02315at 673.868 kb on + strand, within ABI39_RS02315at 673.876 kb on - strand, within ABI39_RS02315at 673.876 kb on - strand, within ABI39_RS02315at 673.903 kb on + strand, within ABI39_RS02315at 673.927 kb on - strand, within ABI39_RS02315at 674.003 kb on - strand, within ABI39_RS02315at 674.014 kb on - strand, within ABI39_RS02315at 674.174 kb on + strand, within ABI39_RS02315at 674.205 kb on + strand, within ABI39_RS02315at 674.206 kb on - strand, within ABI39_RS02315at 674.233 kb on - strand, within ABI39_RS02315at 674.416 kb on + strandat 674.417 kb on - strandat 674.469 kb on + strandat 674.469 kb on + strandat 674.470 kb on - strandat 674.590 kb on - strandat 674.590 kb on - strandat 674.590 kb on - strandat 674.645 kb on + strandat 674.676 kb on + strandat 674.677 kb on - strandat 674.677 kb on - strandat 674.678 kb on + strandat 674.696 kb on + strandat 674.793 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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672,035 + ABI39_RS02310 0.29 -0.2
672,090 - ABI39_RS02310 0.33 +0.6
672,186 + ABI39_RS02310 0.41 +0.1
672,277 - ABI39_RS02310 0.47 +0.2
672,331 - ABI39_RS02310 0.51 +0.4
672,375 - ABI39_RS02310 0.55 -1.7
672,398 + ABI39_RS02310 0.56 -0.1
672,398 + ABI39_RS02310 0.56 +0.1
672,417 - ABI39_RS02310 0.58 -0.1
672,634 - ABI39_RS02310 0.74 +0.3
672,657 + ABI39_RS02310 0.76 -0.3
672,782 - ABI39_RS02310 0.85 +0.5
672,797 + ABI39_RS02310 0.86 +0.6
672,816 + ABI39_RS02310 0.88 -0.3
672,897 - +0.2
673,010 + -0.3
673,010 + +1.1
673,010 + +0.3
673,010 + +0.2
673,010 + -1.3
673,015 - -0.3
673,026 + -1.0
673,109 - -4.6
673,109 - -4.6
673,109 - -5.4
673,163 + ABI39_RS02315 0.11 -3.3
673,189 - ABI39_RS02315 0.13 -2.6
673,421 - ABI39_RS02315 0.29 -3.9
673,496 + ABI39_RS02315 0.34 -3.2
673,496 + ABI39_RS02315 0.34 -2.4
673,496 + ABI39_RS02315 0.34 -2.3
673,497 - ABI39_RS02315 0.34 -3.4
673,497 - ABI39_RS02315 0.34 -3.2
673,551 + ABI39_RS02315 0.38 -3.6
673,632 + ABI39_RS02315 0.43 -3.1
673,858 - ABI39_RS02315 0.59 -4.6
673,868 + ABI39_RS02315 0.59 -4.0
673,876 - ABI39_RS02315 0.60 -4.9
673,876 - ABI39_RS02315 0.60 -3.0
673,903 + ABI39_RS02315 0.62 -4.0
673,927 - ABI39_RS02315 0.63 -3.2
674,003 - ABI39_RS02315 0.68 -2.6
674,014 - ABI39_RS02315 0.69 -4.0
674,174 + ABI39_RS02315 0.80 -2.6
674,205 + ABI39_RS02315 0.82 -5.4
674,206 - ABI39_RS02315 0.82 -5.3
674,233 - ABI39_RS02315 0.84 -1.5
674,416 + -3.5
674,417 - -3.7
674,469 + -1.4
674,469 + -3.4
674,470 - -4.9
674,590 - +0.5
674,590 - -0.4
674,590 - -0.2
674,645 + -0.5
674,676 + -0.5
674,677 - -0.3
674,677 - +0.0
674,678 + -0.0
674,696 + -0.5
674,793 + -0.5

Or see this region's nucleotide sequence