Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01290 and ABI39_RS01295 are separated by 449 nucleotides ABI39_RS01295 and ABI39_RS01300 are separated by 461 nucleotides
ABI39_RS01290: ABI39_RS01290 - efflux RND transporter periplasmic adaptor subunit, at 398,147 to 399,358
_RS01290
ABI39_RS01295: ABI39_RS01295 - NADP-dependent malic enzyme, at 399,808 to 402,093
_RS01295
ABI39_RS01300: ABI39_RS01300 - NADP-specific glutamate dehydrogenase, at 402,555 to 403,889
_RS01300
Position (kb) 399
400
401
402
403 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 398.837 kb on + strand, within ABI39_RS01290 at 398.938 kb on + strand, within ABI39_RS01290 at 399.048 kb on + strand, within ABI39_RS01290 at 399.055 kb on + strand, within ABI39_RS01290 at 399.209 kb on - strand, within ABI39_RS01290 at 399.215 kb on + strand, within ABI39_RS01290 at 399.216 kb on - strand, within ABI39_RS01290 at 399.341 kb on - strand at 399.362 kb on + strand at 399.592 kb on - strand at 399.599 kb on - strand at 399.602 kb on + strand at 399.603 kb on - strand at 400.005 kb on - strand at 400.116 kb on + strand, within ABI39_RS01295 at 400.371 kb on - strand, within ABI39_RS01295 at 400.464 kb on - strand, within ABI39_RS01295 at 400.544 kb on + strand, within ABI39_RS01295 at 400.544 kb on + strand, within ABI39_RS01295 at 400.545 kb on - strand, within ABI39_RS01295 at 400.545 kb on - strand, within ABI39_RS01295 at 400.766 kb on + strand, within ABI39_RS01295 at 400.782 kb on + strand, within ABI39_RS01295 at 400.904 kb on - strand, within ABI39_RS01295 at 401.223 kb on - strand, within ABI39_RS01295 at 401.223 kb on - strand, within ABI39_RS01295 at 401.468 kb on + strand, within ABI39_RS01295 at 401.470 kb on + strand, within ABI39_RS01295 at 401.473 kb on - strand, within ABI39_RS01295 at 401.530 kb on + strand, within ABI39_RS01295 at 401.640 kb on + strand, within ABI39_RS01295 at 401.762 kb on - strand, within ABI39_RS01295 at 401.793 kb on - strand, within ABI39_RS01295 at 401.793 kb on - strand, within ABI39_RS01295 at 401.829 kb on + strand, within ABI39_RS01295 at 401.834 kb on + strand, within ABI39_RS01295 at 401.889 kb on - strand at 401.919 kb on + strand at 401.924 kb on - strand at 401.992 kb on - strand at 402.096 kb on - strand at 402.157 kb on + strand at 402.289 kb on - strand at 402.637 kb on + strand at 402.723 kb on + strand, within ABI39_RS01300 at 402.758 kb on + strand, within ABI39_RS01300 at 402.795 kb on - strand, within ABI39_RS01300 at 402.903 kb on - strand, within ABI39_RS01300
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 398,837 + ABI39_RS01290 0.57 +0.4 398,938 + ABI39_RS01290 0.65 -0.3 399,048 + ABI39_RS01290 0.74 +0.2 399,055 + ABI39_RS01290 0.75 +1.0 399,209 - ABI39_RS01290 0.88 -0.4 399,215 + ABI39_RS01290 0.88 -0.5 399,216 - ABI39_RS01290 0.88 -0.3 399,341 - +0.1 399,362 + +0.1 399,592 - -0.8 399,599 - -1.5 399,602 + -0.7 399,603 - -0.7 400,005 - -0.4 400,116 + ABI39_RS01295 0.13 +0.8 400,371 - ABI39_RS01295 0.25 -0.4 400,464 - ABI39_RS01295 0.29 -1.5 400,544 + ABI39_RS01295 0.32 -0.5 400,544 + ABI39_RS01295 0.32 -1.2 400,545 - ABI39_RS01295 0.32 -0.2 400,545 - ABI39_RS01295 0.32 -0.4 400,766 + ABI39_RS01295 0.42 -1.7 400,782 + ABI39_RS01295 0.43 -0.8 400,904 - ABI39_RS01295 0.48 -1.7 401,223 - ABI39_RS01295 0.62 -1.0 401,223 - ABI39_RS01295 0.62 -0.4 401,468 + ABI39_RS01295 0.73 -0.7 401,470 + ABI39_RS01295 0.73 -0.6 401,473 - ABI39_RS01295 0.73 -0.3 401,530 + ABI39_RS01295 0.75 -1.1 401,640 + ABI39_RS01295 0.80 -0.4 401,762 - ABI39_RS01295 0.85 -0.4 401,793 - ABI39_RS01295 0.87 -0.9 401,793 - ABI39_RS01295 0.87 -0.6 401,829 + ABI39_RS01295 0.88 -1.0 401,834 + ABI39_RS01295 0.89 +0.1 401,889 - -1.2 401,919 + -0.1 401,924 - -1.6 401,992 - -0.9 402,096 - +0.4 402,157 + -0.3 402,289 - +0.1 402,637 + -4.7 402,723 + ABI39_RS01300 0.13 -4.1 402,758 + ABI39_RS01300 0.15 -4.0 402,795 - ABI39_RS01300 0.18 -5.1 402,903 - ABI39_RS01300 0.26 -4.6
Or see this region's nucleotide sequence