Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00405 and ABI39_RS00410 are separated by 77 nucleotides ABI39_RS00410 and ABI39_RS00415 are separated by 4 nucleotides ABI39_RS00415 and ABI39_RS00420 overlap by 4 nucleotides
ABI39_RS00405: ABI39_RS00405 - phosphoribosylformylglycinamidine synthase, at 108,200 to 111,904
_RS00405
ABI39_RS00410: ABI39_RS00410 - response regulator, at 111,982 to 115,998
_RS00410
ABI39_RS00415: ABI39_RS00415 - chromate transporter, at 116,003 to 116,551
_RS00415
ABI39_RS00420: ABI39_RS00420 - chromate transporter, at 116,548 to 117,120
_RS00420
Position (kb) 111
112
113
114
115
116 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 110.997 kb on - strand, within ABI39_RS00405 at 111.004 kb on - strand, within ABI39_RS00405 at 111.204 kb on - strand, within ABI39_RS00405 at 111.402 kb on - strand, within ABI39_RS00405 at 111.437 kb on - strand, within ABI39_RS00405 at 111.456 kb on + strand, within ABI39_RS00405 at 111.596 kb on - strand at 111.605 kb on - strand at 111.669 kb on + strand at 111.683 kb on + strand at 111.683 kb on + strand at 111.809 kb on + strand at 111.823 kb on + strand at 111.874 kb on + strand at 112.051 kb on - strand at 112.170 kb on + strand at 112.204 kb on + strand at 112.453 kb on - strand, within ABI39_RS00410 at 113.102 kb on - strand, within ABI39_RS00410 at 113.193 kb on - strand, within ABI39_RS00410 at 113.195 kb on + strand, within ABI39_RS00410 at 113.285 kb on - strand, within ABI39_RS00410 at 113.391 kb on + strand, within ABI39_RS00410 at 113.719 kb on + strand, within ABI39_RS00410 at 114.150 kb on + strand, within ABI39_RS00410 at 114.170 kb on - strand, within ABI39_RS00410 at 114.488 kb on + strand, within ABI39_RS00410 at 114.651 kb on + strand, within ABI39_RS00410 at 114.724 kb on + strand, within ABI39_RS00410 at 114.725 kb on - strand, within ABI39_RS00410 at 114.913 kb on - strand, within ABI39_RS00410 at 115.476 kb on - strand, within ABI39_RS00410 at 115.740 kb on - strand at 116.030 kb on - strand at 116.166 kb on + strand, within ABI39_RS00415 at 116.201 kb on - strand, within ABI39_RS00415 at 116.209 kb on + strand, within ABI39_RS00415 at 116.275 kb on + strand, within ABI39_RS00415 at 116.333 kb on - strand, within ABI39_RS00415 at 116.359 kb on - strand, within ABI39_RS00415 at 116.359 kb on - strand, within ABI39_RS00415 at 116.409 kb on + strand, within ABI39_RS00415 at 116.436 kb on + strand, within ABI39_RS00415 at 116.453 kb on - strand, within ABI39_RS00415 at 116.514 kb on + strand at 116.514 kb on + strand at 116.515 kb on - strand at 116.538 kb on - strand at 116.569 kb on + strand at 116.611 kb on + strand, within ABI39_RS00420 at 116.630 kb on + strand, within ABI39_RS00420 at 116.685 kb on + strand, within ABI39_RS00420 at 116.725 kb on - strand, within ABI39_RS00420 at 116.736 kb on + strand, within ABI39_RS00420 at 116.751 kb on + strand, within ABI39_RS00420 at 116.751 kb on + strand, within ABI39_RS00420 at 116.792 kb on + strand, within ABI39_RS00420 at 116.841 kb on - strand, within ABI39_RS00420 at 116.904 kb on - strand, within ABI39_RS00420 at 116.986 kb on + strand, within ABI39_RS00420
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 110,997 - ABI39_RS00405 0.75 -6.2 111,004 - ABI39_RS00405 0.76 -2.7 111,204 - ABI39_RS00405 0.81 -3.6 111,402 - ABI39_RS00405 0.86 -5.3 111,437 - ABI39_RS00405 0.87 -5.3 111,456 + ABI39_RS00405 0.88 -4.6 111,596 - -4.9 111,605 - -2.7 111,669 + -4.5 111,683 + -5.2 111,683 + -3.0 111,809 + -6.4 111,823 + -6.0 111,874 + -3.1 112,051 - -0.2 112,170 + -0.7 112,204 + -1.2 112,453 - ABI39_RS00410 0.12 -0.5 113,102 - ABI39_RS00410 0.28 +0.3 113,193 - ABI39_RS00410 0.30 +0.1 113,195 + ABI39_RS00410 0.30 -0.4 113,285 - ABI39_RS00410 0.32 -0.7 113,391 + ABI39_RS00410 0.35 -0.7 113,719 + ABI39_RS00410 0.43 -1.1 114,150 + ABI39_RS00410 0.54 -1.9 114,170 - ABI39_RS00410 0.54 +0.5 114,488 + ABI39_RS00410 0.62 +1.1 114,651 + ABI39_RS00410 0.66 -0.5 114,724 + ABI39_RS00410 0.68 -0.5 114,725 - ABI39_RS00410 0.68 +0.5 114,913 - ABI39_RS00410 0.73 -1.2 115,476 - ABI39_RS00410 0.87 -0.5 115,740 - -0.9 116,030 - +0.3 116,166 + ABI39_RS00415 0.30 -0.3 116,201 - ABI39_RS00415 0.36 +0.3 116,209 + ABI39_RS00415 0.38 +0.1 116,275 + ABI39_RS00415 0.50 +0.3 116,333 - ABI39_RS00415 0.60 +0.1 116,359 - ABI39_RS00415 0.65 -0.4 116,359 - ABI39_RS00415 0.65 +0.0 116,409 + ABI39_RS00415 0.74 -0.1 116,436 + ABI39_RS00415 0.79 -0.2 116,453 - ABI39_RS00415 0.82 -0.4 116,514 + -0.6 116,514 + -0.8 116,515 - -0.2 116,538 - -0.2 116,569 + -0.3 116,611 + ABI39_RS00420 0.11 -3.7 116,630 + ABI39_RS00420 0.14 +0.0 116,685 + ABI39_RS00420 0.24 +0.5 116,725 - ABI39_RS00420 0.31 -0.5 116,736 + ABI39_RS00420 0.33 +0.1 116,751 + ABI39_RS00420 0.35 +0.2 116,751 + ABI39_RS00420 0.35 +1.3 116,792 + ABI39_RS00420 0.43 +0.5 116,841 - ABI39_RS00420 0.51 -0.1 116,904 - ABI39_RS00420 0.62 +0.3 116,986 + ABI39_RS00420 0.76 +0.3
Or see this region's nucleotide sequence