Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22805

Experiment: Experiment:TE, Melon 2 Petiole 3 (TE-S-M2-P3)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 3 (TE-S-M2-P3)
4,339,818	-				+0.0
4,339,849	+				+1.6
4,339,850	-				+2.8
4,340,736	+				-2.0
4,340,737	-				-2.6
4,340,755	+				+0.1
4,340,762	+				-1.9
4,340,789	+				-2.3
4,340,789	+				-0.2
4,340,803	+				-0.3
4,340,804	-				-0.5
4,340,807	+				-0.4
4,340,808	-				-0.6
4,340,915	-				+1.4
4,340,986	+		LU632_RS22805	0.10	-0.4
4,341,005	+		LU632_RS22805	0.11	+1.2
4,341,049	-		LU632_RS22805	0.13	+1.3
4,341,057	+		LU632_RS22805	0.14	+0.3
4,341,182	+		LU632_RS22805	0.20	-0.4
4,341,182	+		LU632_RS22805	0.20	-0.5
4,341,182	+		LU632_RS22805	0.20	+0.7
4,341,182	+		LU632_RS22805	0.20	+0.5
4,341,182	+		LU632_RS22805	0.20	-1.8
4,341,183	-		LU632_RS22805	0.20	-1.4
4,341,183	-		LU632_RS22805	0.20	+0.2
4,341,183	-		LU632_RS22805	0.20	+0.5
4,341,184	+		LU632_RS22805	0.20	-1.2
4,341,184	+		LU632_RS22805	0.20	+0.8
4,341,185	-		LU632_RS22805	0.20	-0.3
4,341,185	-		LU632_RS22805	0.20	+1.6
4,341,185	-		LU632_RS22805	0.20	-1.6
4,341,215	-		LU632_RS22805	0.21	+3.8
4,341,309	-		LU632_RS22805	0.26	-1.4
4,341,311	-		LU632_RS22805	0.26	-2.3
4,341,415	+		LU632_RS22805	0.31	-2.8
4,341,415	+		LU632_RS22805	0.31	+0.7
4,341,430	+		LU632_RS22805	0.32	-1.2
4,341,431	-		LU632_RS22805	0.32	+0.6
4,341,439	+		LU632_RS22805	0.32	+0.0
4,341,440	-		LU632_RS22805	0.32	-1.2
4,341,612	+		LU632_RS22805	0.41	+0.4
4,341,612	+		LU632_RS22805	0.41	-0.6
4,341,612	+		LU632_RS22805	0.41	-1.1
4,341,717	-		LU632_RS22805	0.46	+3.1
4,341,720	-		LU632_RS22805	0.46	-0.7
4,341,914	+		LU632_RS22805	0.55	-0.2
4,341,915	-		LU632_RS22805	0.55	+0.2
4,341,968	-		LU632_RS22805	0.58	-0.8
4,342,101	+		LU632_RS22805	0.64	+0.2
4,342,102	-		LU632_RS22805	0.64	-0.5
4,342,105	+		LU632_RS22805	0.65	+0.5
4,342,105	+		LU632_RS22805	0.65	-1.2
4,342,116	-		LU632_RS22805	0.65	-2.9
4,342,116	-		LU632_RS22805	0.65	-0.4
4,342,166	-		LU632_RS22805	0.68	+0.5
4,342,327	+		LU632_RS22805	0.75	+1.2
4,342,327	+		LU632_RS22805	0.75	-2.2
4,342,384	+		LU632_RS22805	0.78	+0.1
4,342,413	+		LU632_RS22805	0.79	-1.9
4,342,413	+		LU632_RS22805	0.79	+0.7
4,342,413	+		LU632_RS22805	0.79	+1.8
4,342,413	+		LU632_RS22805	0.79	-1.0
4,342,413	+		LU632_RS22805	0.79	+1.2
4,342,414	-		LU632_RS22805	0.80	-0.1
4,342,414	-		LU632_RS22805	0.80	+1.3
4,342,414	-		LU632_RS22805	0.80	+1.3
4,342,414	-		LU632_RS22805	0.80	+0.6
4,342,414	-		LU632_RS22805	0.80	+0.5
4,342,425	+		LU632_RS22805	0.80	+2.8
4,342,482	+		LU632_RS22805	0.83	+0.7
4,342,512	+		LU632_RS22805	0.84	-0.4
4,342,524	+		LU632_RS22805	0.85	-1.6
4,342,524	+		LU632_RS22805	0.85	+0.1
4,342,525	-		LU632_RS22805	0.85	-0.5
4,342,527	+		LU632_RS22805	0.85	-1.3
4,342,528	-		LU632_RS22805	0.85	+0.6
4,342,539	+		LU632_RS22805	0.86	-1.1
4,342,540	-		LU632_RS22805	0.86	+0.9
4,342,560	+		LU632_RS22805	0.87	+1.8
4,342,560	+		LU632_RS22805	0.87	+0.6
4,342,560	+		LU632_RS22805	0.87	+0.1
4,342,560	+		LU632_RS22805	0.87	+0.1
4,342,561	-		LU632_RS22805	0.87	-0.1
4,342,669	-				+1.8
4,342,724	+				+1.1
4,342,725	-				-1.3
4,342,725	-				-0.9
4,342,725	-				+0.5
4,342,809	-				-0.6
4,342,924	+				-2.5
4,342,924	+				+0.0
4,342,981	+				-2.1
4,342,985	+				+0.2
4,342,986	-				+0.0
4,343,014	+		LU632_RS22810	0.12	-2.5
4,343,020	+		LU632_RS22810	0.12	-1.6
4,343,021	-		LU632_RS22810	0.13	-2.9
4,343,116	+		LU632_RS22810	0.20	-2.3
4,343,117	-		LU632_RS22810	0.20	-4.8
4,343,165	+		LU632_RS22810	0.24	-3.7
4,343,166	-		LU632_RS22810	0.24	-5.0
4,343,168	+		LU632_RS22810	0.25	-1.6
4,343,168	+		LU632_RS22810	0.25	+0.8
4,343,169	-		LU632_RS22810	0.25	-2.0
4,343,235	+		LU632_RS22810	0.30	-3.6
4,343,235	+		LU632_RS22810	0.30	+0.8
4,343,249	+		LU632_RS22810	0.31	-2.3
4,343,249	+		LU632_RS22810	0.31	-2.3
4,343,250	-		LU632_RS22810	0.31	-4.0
4,343,250	-		LU632_RS22810	0.31	-0.9
4,343,359	-		LU632_RS22810	0.40	+0.5
4,343,405	+		LU632_RS22810	0.44	-3.3
4,343,405	+		LU632_RS22810	0.44	+2.8
4,343,464	+		LU632_RS22810	0.49	-4.5
4,343,465	-		LU632_RS22810	0.49	-4.0
4,343,543	+		LU632_RS22810	0.55	+0.5
4,343,566	+		LU632_RS22810	0.57	-3.2
4,343,570	-		LU632_RS22810	0.57	-0.2
4,343,588	-		LU632_RS22810	0.59	+0.5
4,343,725	-		LU632_RS22810	0.70	-1.0