Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19625

Experiment: Experiment:TE, Melon 2 Petiole 3 (TE-S-M2-P3)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 3 (TE-S-M2-P3)
3,722,146	+	argE	LU632_RS19620	0.56	-3.5
3,722,226	-	argE	LU632_RS19620	0.63	-0.4
3,722,274	+	argE	LU632_RS19620	0.67	+2.6
3,722,274	+	argE	LU632_RS19620	0.67	-1.5
3,722,274	+	argE	LU632_RS19620	0.67	-1.2
3,722,275	-	argE	LU632_RS19620	0.68	-1.5
3,722,275	-	argE	LU632_RS19620	0.68	-0.7
3,722,275	-	argE	LU632_RS19620	0.68	+1.6
3,722,275	-	argE	LU632_RS19620	0.68	-0.2
3,722,484	+	argE	LU632_RS19620	0.86	-2.9
3,722,574	+				-2.0
3,722,575	-				-2.8
3,722,576	+				-0.7
3,722,577	-				-2.7
3,722,779	+				+0.1
3,722,780	-				+1.1
3,722,826	+				+0.6
3,722,855	+				+0.1
3,722,856	-				+0.2
3,722,859	-				-0.3
3,722,859	-				+0.2
3,722,906	+				-0.8
3,722,909	-				+0.1
3,722,909	-				+2.1
3,722,928	+				-2.9
3,722,968	-				-0.4
3,722,978	+				+1.7
3,723,044	-				+2.2
3,723,124	+				-0.6
3,723,131	-				-0.0
3,723,259	+				+0.1
3,723,275	+				-0.4
3,723,283	+	ppc	LU632_RS19625	0.10	-1.7
3,723,283	+	ppc	LU632_RS19625	0.10	+2.3
3,723,284	-	ppc	LU632_RS19625	0.10	-1.0
3,723,284	-	ppc	LU632_RS19625	0.10	+2.4
3,723,284	-	ppc	LU632_RS19625	0.10	+0.5
3,723,284	-	ppc	LU632_RS19625	0.10	+0.6
3,723,461	-	ppc	LU632_RS19625	0.17	+2.0
3,723,593	+	ppc	LU632_RS19625	0.22	-1.4
3,723,593	+	ppc	LU632_RS19625	0.22	+0.9
3,723,593	+	ppc	LU632_RS19625	0.22	+0.4
3,723,779	-	ppc	LU632_RS19625	0.29	+1.6
3,723,813	+	ppc	LU632_RS19625	0.30	+1.1
3,723,814	-	ppc	LU632_RS19625	0.30	-0.7
3,723,814	-	ppc	LU632_RS19625	0.30	-1.4
3,723,814	-	ppc	LU632_RS19625	0.30	+0.3
3,723,899	-	ppc	LU632_RS19625	0.33	-1.7
3,723,899	-	ppc	LU632_RS19625	0.33	+0.0
3,723,969	+	ppc	LU632_RS19625	0.36	-1.7
3,723,998	+	ppc	LU632_RS19625	0.37	+0.3
3,724,051	+	ppc	LU632_RS19625	0.39	+0.7
3,724,051	+	ppc	LU632_RS19625	0.39	+1.3
3,724,080	+	ppc	LU632_RS19625	0.40	-1.2
3,724,080	+	ppc	LU632_RS19625	0.40	+0.6
3,724,080	+	ppc	LU632_RS19625	0.40	-0.8
3,724,080	+	ppc	LU632_RS19625	0.40	+0.3
3,724,080	+	ppc	LU632_RS19625	0.40	+0.3
3,724,080	+	ppc	LU632_RS19625	0.40	-2.1
3,724,082	+	ppc	LU632_RS19625	0.40	+1.0
3,724,083	-	ppc	LU632_RS19625	0.40	+0.8
3,724,091	+	ppc	LU632_RS19625	0.41	+0.2
3,724,342	+	ppc	LU632_RS19625	0.50	-1.2
3,724,342	+	ppc	LU632_RS19625	0.50	-0.3
3,724,343	-	ppc	LU632_RS19625	0.50	-1.0
3,724,343	-	ppc	LU632_RS19625	0.50	-1.4
3,724,483	-	ppc	LU632_RS19625	0.55	+3.6
3,724,686	-	ppc	LU632_RS19625	0.63	+1.6
3,724,871	-	ppc	LU632_RS19625	0.70	-1.5
3,725,024	+	ppc	LU632_RS19625	0.76	-0.2
3,725,039	-	ppc	LU632_RS19625	0.76	-1.7
3,725,050	-	ppc	LU632_RS19625	0.77	+0.0
3,725,054	+	ppc	LU632_RS19625	0.77	+2.8
3,725,055	-	ppc	LU632_RS19625	0.77	+1.7
3,725,055	-	ppc	LU632_RS19625	0.77	+0.2
3,725,055	-	ppc	LU632_RS19625	0.77	-1.1
3,725,357	+	ppc	LU632_RS19625	0.88	-2.8
3,725,357	+	ppc	LU632_RS19625	0.88	+2.4
3,725,358	-	ppc	LU632_RS19625	0.88	+2.6
3,725,517	-				+2.6
3,725,690	+				-0.8
3,725,691	-				+0.7
3,725,691	-				-0.0
3,725,691	-				+0.9
3,725,843	+				+1.1
3,725,843	+				+1.0
3,725,843	+				+0.6
3,725,844	-				-1.5
3,725,862	+				-0.1
3,725,863	-				+0.0
3,725,901	-				+1.6
3,726,028	+				-0.0
3,726,028	+				+0.9
3,726,028	+				+1.6
3,726,028	+				-1.3
3,726,029	-				-1.7
3,726,029	-				+0.2
3,726,030	+				+1.0
3,726,030	+				-0.7
3,726,031	-				+0.5
3,726,061	+				+1.2
3,726,063	+				-0.4
3,726,063	+				-0.0
3,726,064	-				+2.9
3,726,084	-				-1.9
3,726,124	+				-0.5
3,726,124	+				-0.7
3,726,129	+				-1.8
3,726,129	+				+0.3
3,726,323	+	metF	LU632_RS19630	0.27	-0.4
3,726,477	-	metF	LU632_RS19630	0.44	+0.4
3,726,584	-	metF	LU632_RS19630	0.56	-2.0
3,726,635	+	metF	LU632_RS19630	0.62	-0.9
3,726,635	+	metF	LU632_RS19630	0.62	+2.0
3,726,636	-	metF	LU632_RS19630	0.62	-0.8