Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16960

Experiment: Experiment:TE, Melon 2 Petiole 3 (TE-S-M2-P3)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 3 (TE-S-M2-P3)
3,197,483	+				-1.0
3,197,483	+				+1.7
3,197,484	-				-0.2
3,197,488	-				+0.8
3,197,490	+				-1.8
3,197,596	-	raiA	LU632_RS16955	0.31	+0.3
3,197,616	+	raiA	LU632_RS16955	0.37	-1.7
3,197,698	-	raiA	LU632_RS16955	0.61	+1.1
3,197,698	-	raiA	LU632_RS16955	0.61	-2.8
3,197,698	-	raiA	LU632_RS16955	0.61	-0.7
3,197,745	+	raiA	LU632_RS16955	0.74	+3.7
3,197,746	-	raiA	LU632_RS16955	0.75	-0.7
3,197,746	-	raiA	LU632_RS16955	0.75	-1.6
3,197,831	-				-2.0
3,197,885	-				+2.5
3,198,077	+				-1.4
3,198,145	-				+0.9
3,198,174	+				+0.0
3,198,221	-				-1.3
3,198,288	-				-1.3
3,198,316	-				-2.1
3,198,398	-				+1.5
3,198,398	-				-1.5
3,198,408	+				-3.5
3,198,409	-				-0.3
3,198,411	+				-0.3
3,198,412	-				+1.3
3,198,412	-				+2.5
3,198,412	-				-0.3
3,198,414	+				+0.2
3,198,444	-				-1.2
3,198,485	+				-0.4
3,198,486	-				-1.0
3,198,486	-				-1.8
3,198,594	+	pheA	LU632_RS16960	0.15	+0.3
3,198,597	-	pheA	LU632_RS16960	0.16	-0.8
3,198,626	-	pheA	LU632_RS16960	0.18	-0.7
3,198,626	-	pheA	LU632_RS16960	0.18	-1.7
3,198,626	-	pheA	LU632_RS16960	0.18	-1.3
3,198,626	-	pheA	LU632_RS16960	0.18	-1.1
3,198,628	+	pheA	LU632_RS16960	0.18	-0.6
3,198,628	+	pheA	LU632_RS16960	0.18	-1.5
3,198,628	+	pheA	LU632_RS16960	0.18	-0.9
3,198,628	+	pheA	LU632_RS16960	0.18	-0.3
3,198,628	+	pheA	LU632_RS16960	0.18	-1.2
3,198,628	+	pheA	LU632_RS16960	0.18	-1.1
3,198,629	-	pheA	LU632_RS16960	0.18	-0.5
3,198,629	-	pheA	LU632_RS16960	0.18	-1.8
3,198,629	-	pheA	LU632_RS16960	0.18	-1.6
3,198,629	-	pheA	LU632_RS16960	0.18	-2.2
3,198,629	-	pheA	LU632_RS16960	0.18	-1.0
3,198,629	-	pheA	LU632_RS16960	0.18	+0.3
3,198,629	-	pheA	LU632_RS16960	0.18	-1.6
3,198,629	-	pheA	LU632_RS16960	0.18	+0.2
3,198,629	-	pheA	LU632_RS16960	0.18	-1.7
3,198,629	-	pheA	LU632_RS16960	0.18	-1.1
3,198,630	+	pheA	LU632_RS16960	0.19	-2.2
3,198,631	-	pheA	LU632_RS16960	0.19	-0.2
3,198,749	+	pheA	LU632_RS16960	0.29	-0.9
3,198,749	+	pheA	LU632_RS16960	0.29	-1.2
3,198,782	-	pheA	LU632_RS16960	0.32	-0.1
3,198,804	+	pheA	LU632_RS16960	0.34	-0.5
3,198,871	+	pheA	LU632_RS16960	0.39	-0.2
3,198,932	+	pheA	LU632_RS16960	0.45	+0.0
3,198,952	-	pheA	LU632_RS16960	0.46	+0.3
3,198,952	-	pheA	LU632_RS16960	0.46	-0.9
3,198,989	+	pheA	LU632_RS16960	0.49	+0.5
3,199,013	+	pheA	LU632_RS16960	0.52	+0.9
3,199,014	-	pheA	LU632_RS16960	0.52	+1.5
3,199,102	+	pheA	LU632_RS16960	0.59	+0.7
3,199,103	-	pheA	LU632_RS16960	0.59	+0.7
3,199,194	-	pheA	LU632_RS16960	0.67	-0.9
3,199,194	-	pheA	LU632_RS16960	0.67	+0.0
3,199,194	-	pheA	LU632_RS16960	0.67	-1.0
3,199,208	+	pheA	LU632_RS16960	0.68	-0.3
3,199,208	+	pheA	LU632_RS16960	0.68	+2.8
3,199,209	-	pheA	LU632_RS16960	0.68	+2.9
3,199,209	-	pheA	LU632_RS16960	0.68	-1.2
3,199,243	+	pheA	LU632_RS16960	0.71	+0.5
3,199,243	+	pheA	LU632_RS16960	0.71	-2.2
3,199,245	+	pheA	LU632_RS16960	0.71	-0.1
3,199,245	+	pheA	LU632_RS16960	0.71	-0.1
3,199,246	-	pheA	LU632_RS16960	0.72	-2.5
3,199,255	-	pheA	LU632_RS16960	0.72	-0.8
3,199,283	+	pheA	LU632_RS16960	0.75	+1.3
3,199,283	+	pheA	LU632_RS16960	0.75	-1.5
3,199,349	+	pheA	LU632_RS16960	0.80	-0.6
3,199,350	-	pheA	LU632_RS16960	0.81	-0.3
3,199,350	-	pheA	LU632_RS16960	0.81	-0.1
3,199,378	-	pheA	LU632_RS16960	0.83	-0.8
3,199,378	-	pheA	LU632_RS16960	0.83	+0.6
3,199,378	-	pheA	LU632_RS16960	0.83	-2.6
3,199,382	+	pheA	LU632_RS16960	0.83	-1.0
3,199,621	-				-0.3
3,199,670	+				+0.3
3,199,670	+				+0.2
3,199,693	+				+1.7
3,199,740	+				-3.4
3,200,045	-	grcA	LU632_RS16965	0.76	-0.5
3,200,045	-	grcA	LU632_RS16965	0.76	+0.4
3,200,137	+				-2.4
3,200,138	-				+0.5
3,200,154	+				+1.7
3,200,154	+				+2.1
3,200,158	+				-0.2
3,200,158	+				-2.3
3,200,158	+				-0.3
3,200,217	-				-0.8
3,200,218	+				-0.0
3,200,219	-				+1.8
3,200,219	-				+1.8
3,200,220	+				+0.6
3,200,220	+				+0.0
3,200,221	-				-1.1
3,200,402	+				-0.2
3,200,403	-				+0.3
3,200,499	-	ung	LU632_RS16970	0.11	-0.8
3,200,553	-	ung	LU632_RS16970	0.19	+1.1