Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16540

Experiment: Experiment:TE, Melon 2 Petiole 3 (TE-S-M2-P3)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 3 (TE-S-M2-P3)
3,132,485	+		LU632_RS16525	0.76	-1.0
3,132,701	-				-1.7
3,132,723	+				-0.1
3,132,723	+				-0.7
3,132,723	+				+3.0
3,132,724	-				-0.8
3,132,759	+				+0.8
3,132,785	+				-1.1
3,132,804	+				+1.1
3,132,978	+		LU632_RS16530	0.48	+0.3
3,132,978	+		LU632_RS16530	0.48	-2.4
3,132,979	-		LU632_RS16530	0.49	-1.6
3,132,984	-		LU632_RS16530	0.52	-1.5
3,133,042	+		LU632_RS16530	0.89	+0.6
3,133,042	+		LU632_RS16530	0.89	-0.3
3,133,042	+		LU632_RS16530	0.89	-0.5
3,133,042	+		LU632_RS16530	0.89	-1.3
3,133,042	+		LU632_RS16530	0.89	+0.2
3,133,043	-				-1.2
3,133,043	-				-2.3
3,133,043	-				+2.1
3,133,046	+				+1.0
3,133,046	+				-0.8
3,133,046	+				-0.8
3,133,047	-				-0.9
3,133,057	-				-2.2
3,133,126	+				+0.5
3,133,157	+				-1.1
3,133,187	+				+0.3
3,133,188	-				+0.4
3,133,192	+				+0.0
3,133,196	+				+0.7
3,133,199	+		LU632_RS16535	0.11	+1.2
3,133,215	+		LU632_RS16535	0.18	+1.0
3,133,216	-		LU632_RS16535	0.19	+1.7
3,133,263	+		LU632_RS16535	0.40	-1.0
3,133,263	+		LU632_RS16535	0.40	+1.0
3,133,263	+		LU632_RS16535	0.40	+1.5
3,133,366	-		LU632_RS16535	0.87	-0.4
3,133,366	-		LU632_RS16535	0.87	+1.4
3,133,366	-		LU632_RS16535	0.87	-1.5
3,133,366	-		LU632_RS16535	0.87	-0.4
3,133,499	+		LU632_RS16540	0.35	+0.1
3,133,499	+		LU632_RS16540	0.35	-1.3
3,133,500	-		LU632_RS16540	0.35	-0.9
3,133,648	+				+3.5
3,133,648	+				-1.4
3,133,928	+		LU632_RS16545	0.54	+1.1
3,134,035	+		LU632_RS16545	0.73	-1.8
3,134,035	+		LU632_RS16545	0.73	-0.5
3,134,035	+		LU632_RS16545	0.73	-0.0
3,134,035	+		LU632_RS16545	0.73	+0.6
3,134,036	-		LU632_RS16545	0.73	+0.5
3,134,323	-		LU632_RS16550	0.79	-1.8
3,134,326	-		LU632_RS16550	0.81	-2.1
3,134,461	+		LU632_RS16555	0.22	+1.5
3,134,473	-		LU632_RS16555	0.28	-1.8
3,134,513	+		LU632_RS16555	0.48	+0.5