Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16100

Experiment: Experiment:TE, Melon 2 Petiole 3 (TE-S-M2-P3)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 3 (TE-S-M2-P3)
3,043,163	-	sucA	LU632_RS16095	0.82	-1.5
3,043,189	-	sucA	LU632_RS16095	0.83	-0.7
3,043,229	-	sucA	LU632_RS16095	0.84	-1.1
3,043,231	+	sucA	LU632_RS16095	0.84	-1.1
3,043,257	-	sucA	LU632_RS16095	0.85	-1.4
3,043,257	-	sucA	LU632_RS16095	0.85	-1.9
3,043,600	-				-2.0
3,043,753	+				-2.2
3,043,754	-				-2.3
3,043,775	-				-5.3
3,043,775	-				-2.9
3,043,775	-				-1.7
3,043,825	-				-4.1
3,043,890	-				-1.5
3,043,921	-				-2.5
3,043,921	-				-1.3
3,043,974	+				-2.9
3,043,989	-				-4.8
3,044,031	+		LU632_RS16100	0.10	-0.5
3,044,031	+		LU632_RS16100	0.10	-1.8
3,044,031	+		LU632_RS16100	0.10	-3.5
3,044,032	-		LU632_RS16100	0.10	+2.5
3,044,229	-		LU632_RS16100	0.38	-4.0
3,044,236	+		LU632_RS16100	0.39	-2.1
3,044,236	+		LU632_RS16100	0.39	-2.0
3,044,237	-		LU632_RS16100	0.39	-2.5
3,044,238	+		LU632_RS16100	0.39	-3.8
3,044,478	-		LU632_RS16100	0.72	-3.3
3,044,634	+				-3.8
3,044,696	-				-3.7
3,044,698	+				-1.0
3,044,699	-				-2.0
3,044,736	-				-3.0
3,044,749	-				-3.0
3,044,931	-	sdhA	LU632_RS16105	0.13	-0.7
3,045,232	-	sdhA	LU632_RS16105	0.30	-4.0
3,045,395	+	sdhA	LU632_RS16105	0.40	-1.5
3,045,395	+	sdhA	LU632_RS16105	0.40	-0.3
3,045,395	+	sdhA	LU632_RS16105	0.40	-1.2
3,045,396	-	sdhA	LU632_RS16105	0.40	-5.1
3,045,396	-	sdhA	LU632_RS16105	0.40	-1.2
3,045,396	-	sdhA	LU632_RS16105	0.40	-1.0
3,045,397	+	sdhA	LU632_RS16105	0.40	-2.0
3,045,398	-	sdhA	LU632_RS16105	0.40	-3.6
3,045,398	-	sdhA	LU632_RS16105	0.40	-2.0
3,045,398	-	sdhA	LU632_RS16105	0.40	-2.8
3,045,398	-	sdhA	LU632_RS16105	0.40	-1.8
3,045,398	-	sdhA	LU632_RS16105	0.40	-0.8
3,045,673	+	sdhA	LU632_RS16105	0.55	-1.7