Experiment: Experiment:TE, Melon 2 Petiole 3 (TE-S-M2-P3)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpoC and LU632_RS00940 are separated by 112 nucleotides LU632_RS00940 and thiH are separated by 79 nucleotides thiH and LU632_RS00950 overlap by 4 nucleotides LU632_RS00950 and thiS are separated by 2 nucleotides thiS and LU632_RS00960 overlap by 17 nucleotides
LU632_RS00935: rpoC - DNA-directed RNA polymerase subunit beta', at 201,400 to 205,620
rpoC
LU632_RS00940: LU632_RS00940 - IS110 family transposase, at 205,733 to 206,310
_RS00940
LU632_RS00945: thiH - 2-iminoacetate synthase ThiH, at 206,390 to 207,520
thiH
LU632_RS00950: LU632_RS00950 - thiazole synthase, at 207,517 to 208,293
_RS00950
LU632_RS00955: thiS - sulfur carrier protein ThiS, at 208,296 to 208,496
thiS
LU632_RS00960: LU632_RS00960 - HesA/MoeB/ThiF family protein, at 208,480 to 209,241
_RS00960
Position (kb) 206
207
208 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 206.293 kb on + strand at 206.364 kb on + strand at 206.384 kb on - strand at 206.388 kb on + strand at 206.389 kb on - strand at 206.415 kb on + strand at 206.525 kb on - strand, within thiH at 206.567 kb on - strand, within thiH at 206.575 kb on + strand, within thiH at 206.575 kb on + strand, within thiH at 206.639 kb on + strand, within thiH at 206.639 kb on + strand, within thiH at 206.809 kb on + strand, within thiH at 206.809 kb on + strand, within thiH at 206.809 kb on + strand, within thiH at 206.809 kb on + strand, within thiH at 206.809 kb on + strand, within thiH at 206.809 kb on + strand, within thiH at 206.810 kb on - strand, within thiH at 206.810 kb on - strand, within thiH at 206.810 kb on - strand, within thiH at 206.810 kb on - strand, within thiH at 206.810 kb on - strand, within thiH at 206.811 kb on + strand, within thiH at 206.811 kb on + strand, within thiH at 206.812 kb on - strand, within thiH at 206.812 kb on - strand, within thiH at 206.812 kb on - strand, within thiH at 206.812 kb on - strand, within thiH at 206.967 kb on + strand, within thiH at 206.967 kb on + strand, within thiH at 206.968 kb on - strand, within thiH at 206.968 kb on - strand, within thiH at 207.021 kb on + strand, within thiH at 207.022 kb on - strand, within thiH at 207.077 kb on + strand, within thiH at 207.077 kb on + strand, within thiH at 207.077 kb on + strand, within thiH at 207.077 kb on + strand, within thiH at 207.078 kb on - strand, within thiH at 207.078 kb on - strand, within thiH at 207.078 kb on - strand, within thiH at 207.102 kb on + strand, within thiH at 207.103 kb on - strand, within thiH at 207.146 kb on + strand, within thiH at 207.147 kb on - strand, within thiH at 207.214 kb on + strand, within thiH at 207.249 kb on + strand, within thiH at 207.250 kb on - strand, within thiH at 207.364 kb on - strand, within thiH at 207.387 kb on - strand, within thiH at 207.387 kb on - strand, within thiH at 207.425 kb on + strand at 207.811 kb on - strand, within LU632_RS00950 at 207.811 kb on - strand, within LU632_RS00950 at 207.832 kb on - strand, within LU632_RS00950 at 207.909 kb on - strand, within LU632_RS00950 at 207.916 kb on + strand, within LU632_RS00950 at 207.917 kb on - strand, within LU632_RS00950 at 207.917 kb on - strand, within LU632_RS00950 at 208.012 kb on - strand, within LU632_RS00950 at 208.012 kb on - strand, within LU632_RS00950 at 208.012 kb on - strand, within LU632_RS00950 at 208.092 kb on + strand, within LU632_RS00950 at 208.093 kb on - strand, within LU632_RS00950 at 208.099 kb on + strand, within LU632_RS00950 at 208.100 kb on - strand, within LU632_RS00950 at 208.100 kb on - strand, within LU632_RS00950 at 208.121 kb on - strand, within LU632_RS00950 at 208.121 kb on - strand, within LU632_RS00950 at 208.289 kb on - strand at 208.298 kb on - strand at 208.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Petiole 3 (TE-S-M2-P3) remove 206,293 + -2.1 206,364 + -0.4 206,384 - -0.3 206,388 + -0.6 206,389 - -2.2 206,415 + +1.2 206,525 - thiH LU632_RS00945 0.12 -0.7 206,567 - thiH LU632_RS00945 0.16 -0.0 206,575 + thiH LU632_RS00945 0.16 -0.9 206,575 + thiH LU632_RS00945 0.16 +0.7 206,639 + thiH LU632_RS00945 0.22 -0.5 206,639 + thiH LU632_RS00945 0.22 -1.0 206,809 + thiH LU632_RS00945 0.37 -1.1 206,809 + thiH LU632_RS00945 0.37 +0.7 206,809 + thiH LU632_RS00945 0.37 +0.4 206,809 + thiH LU632_RS00945 0.37 -0.5 206,809 + thiH LU632_RS00945 0.37 -0.9 206,809 + thiH LU632_RS00945 0.37 +0.2 206,810 - thiH LU632_RS00945 0.37 -0.3 206,810 - thiH LU632_RS00945 0.37 +1.7 206,810 - thiH LU632_RS00945 0.37 -1.1 206,810 - thiH LU632_RS00945 0.37 -2.8 206,810 - thiH LU632_RS00945 0.37 -0.1 206,811 + thiH LU632_RS00945 0.37 -0.3 206,811 + thiH LU632_RS00945 0.37 +0.8 206,812 - thiH LU632_RS00945 0.37 -1.3 206,812 - thiH LU632_RS00945 0.37 +0.1 206,812 - thiH LU632_RS00945 0.37 -0.9 206,812 - thiH LU632_RS00945 0.37 -0.1 206,967 + thiH LU632_RS00945 0.51 +1.1 206,967 + thiH LU632_RS00945 0.51 +0.9 206,968 - thiH LU632_RS00945 0.51 +0.4 206,968 - thiH LU632_RS00945 0.51 -1.3 207,021 + thiH LU632_RS00945 0.56 -2.4 207,022 - thiH LU632_RS00945 0.56 +0.4 207,077 + thiH LU632_RS00945 0.61 -1.3 207,077 + thiH LU632_RS00945 0.61 -3.1 207,077 + thiH LU632_RS00945 0.61 -3.4 207,077 + thiH LU632_RS00945 0.61 -2.1 207,078 - thiH LU632_RS00945 0.61 -1.2 207,078 - thiH LU632_RS00945 0.61 -2.7 207,078 - thiH LU632_RS00945 0.61 +0.4 207,102 + thiH LU632_RS00945 0.63 -2.8 207,103 - thiH LU632_RS00945 0.63 +4.1 207,146 + thiH LU632_RS00945 0.67 -0.5 207,147 - thiH LU632_RS00945 0.67 +0.8 207,214 + thiH LU632_RS00945 0.73 -1.5 207,249 + thiH LU632_RS00945 0.76 -0.6 207,250 - thiH LU632_RS00945 0.76 -0.0 207,364 - thiH LU632_RS00945 0.86 -0.1 207,387 - thiH LU632_RS00945 0.88 +1.4 207,387 - thiH LU632_RS00945 0.88 -1.5 207,425 + -0.7 207,811 - LU632_RS00950 0.38 +1.2 207,811 - LU632_RS00950 0.38 -0.1 207,832 - LU632_RS00950 0.41 -0.6 207,909 - LU632_RS00950 0.50 -2.5 207,916 + LU632_RS00950 0.51 +0.1 207,917 - LU632_RS00950 0.51 +1.5 207,917 - LU632_RS00950 0.51 +2.0 208,012 - LU632_RS00950 0.64 -1.7 208,012 - LU632_RS00950 0.64 +0.7 208,012 - LU632_RS00950 0.64 +1.3 208,092 + LU632_RS00950 0.74 -1.8 208,093 - LU632_RS00950 0.74 -1.0 208,099 + LU632_RS00950 0.75 -0.5 208,100 - LU632_RS00950 0.75 +0.1 208,100 - LU632_RS00950 0.75 +0.4 208,121 - LU632_RS00950 0.78 -0.4 208,121 - LU632_RS00950 0.78 -0.3 208,289 - +1.6 208,298 - -1.5 208,482 - -1.1
Or see this region's nucleotide sequence