Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt adrA and psiF are separated by 101 nucleotides psiF and phoA are separated by 118 nucleotides
BNILDI_22955: adrA - diguanylate cyclase AdrA, at 4,620,110 to 4,621,225
adrA
BNILDI_22960: psiF - phosphate starvation-inducible protein PsiF, at 4,621,327 to 4,621,647
psiF
BNILDI_22965: phoA - alkaline phosphatase, at 4,621,766 to 4,623,181
phoA
Position (kb)
4621
4622 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4620.341 kb on + strand, within adrA at 4620.402 kb on - strand, within adrA at 4620.527 kb on - strand, within adrA at 4620.547 kb on + strand, within adrA at 4620.547 kb on + strand, within adrA at 4620.547 kb on + strand, within adrA at 4620.568 kb on + strand, within adrA at 4620.570 kb on + strand, within adrA at 4620.648 kb on + strand, within adrA at 4620.839 kb on - strand, within adrA at 4621.155 kb on - strand at 4621.155 kb on - strand at 4621.247 kb on + strand at 4621.247 kb on + strand at 4621.249 kb on + strand at 4621.249 kb on + strand at 4621.274 kb on - strand at 4621.300 kb on + strand at 4621.319 kb on - strand at 4621.326 kb on - strand at 4621.357 kb on - strand at 4621.357 kb on - strand at 4621.363 kb on - strand, within psiF at 4621.551 kb on + strand, within psiF at 4621.552 kb on - strand, within psiF at 4621.552 kb on - strand, within psiF at 4621.703 kb on + strand at 4621.703 kb on + strand at 4621.704 kb on - strand at 4621.717 kb on - strand at 4621.797 kb on + strand at 4621.797 kb on + strand at 4621.798 kb on - strand at 4621.880 kb on - strand at 4622.070 kb on - strand, within phoA at 4622.326 kb on + strand, within phoA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,620,341 + adrA BNILDI_22955 0.21 -0.3 4,620,402 - adrA BNILDI_22955 0.26 -0.5 4,620,527 - adrA BNILDI_22955 0.37 +0.6 4,620,547 + adrA BNILDI_22955 0.39 -0.4 4,620,547 + adrA BNILDI_22955 0.39 +1.1 4,620,547 + adrA BNILDI_22955 0.39 -0.0 4,620,568 + adrA BNILDI_22955 0.41 -0.2 4,620,570 + adrA BNILDI_22955 0.41 -1.6 4,620,648 + adrA BNILDI_22955 0.48 +0.3 4,620,839 - adrA BNILDI_22955 0.65 -0.1 4,621,155 - -0.1 4,621,155 - -0.3 4,621,247 + +0.4 4,621,247 + -0.1 4,621,249 + +0.6 4,621,249 + -0.9 4,621,274 - +0.2 4,621,300 + +1.9 4,621,319 - +0.1 4,621,326 - -0.4 4,621,357 - +0.0 4,621,357 - -1.6 4,621,363 - psiF BNILDI_22960 0.11 +0.9 4,621,551 + psiF BNILDI_22960 0.70 +0.5 4,621,552 - psiF BNILDI_22960 0.70 +0.2 4,621,552 - psiF BNILDI_22960 0.70 -0.6 4,621,703 + -0.6 4,621,703 + +0.3 4,621,704 - -0.2 4,621,717 - -0.0 4,621,797 + -0.6 4,621,797 + -0.1 4,621,798 - -0.6 4,621,880 - +0.3 4,622,070 - phoA BNILDI_22965 0.21 -2.5 4,622,326 + phoA BNILDI_22965 0.40 -0.4
Or see this region's nucleotide sequence