Strain Fitness in Escherichia coli ECRC62 around BNILDI_22960

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntadrA and psiF are separated by 101 nucleotidespsiF and phoA are separated by 118 nucleotides BNILDI_22955: adrA - diguanylate cyclase AdrA, at 4,620,110 to 4,621,225 adrA BNILDI_22960: psiF - phosphate starvation-inducible protein PsiF, at 4,621,327 to 4,621,647 psiF BNILDI_22965: phoA - alkaline phosphatase, at 4,621,766 to 4,623,181 phoA Position (kb) 4621 4622Strain fitness (log2 ratio) -2 -1 0 1 2at 4620.341 kb on + strand, within adrAat 4620.402 kb on - strand, within adrAat 4620.527 kb on - strand, within adrAat 4620.547 kb on + strand, within adrAat 4620.547 kb on + strand, within adrAat 4620.547 kb on + strand, within adrAat 4620.568 kb on + strand, within adrAat 4620.570 kb on + strand, within adrAat 4620.648 kb on + strand, within adrAat 4620.839 kb on - strand, within adrAat 4621.155 kb on - strandat 4621.155 kb on - strandat 4621.247 kb on + strandat 4621.247 kb on + strandat 4621.249 kb on + strandat 4621.249 kb on + strandat 4621.274 kb on - strandat 4621.300 kb on + strandat 4621.319 kb on - strandat 4621.326 kb on - strandat 4621.357 kb on - strandat 4621.357 kb on - strandat 4621.363 kb on - strand, within psiFat 4621.551 kb on + strand, within psiFat 4621.552 kb on - strand, within psiFat 4621.552 kb on - strand, within psiFat 4621.703 kb on + strandat 4621.703 kb on + strandat 4621.704 kb on - strandat 4621.717 kb on - strandat 4621.797 kb on + strandat 4621.797 kb on + strandat 4621.798 kb on - strandat 4621.880 kb on - strandat 4622.070 kb on - strand, within phoAat 4622.326 kb on + strand, within phoA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,620,341 + adrA BNILDI_22955 0.21 -0.3
4,620,402 - adrA BNILDI_22955 0.26 -0.5
4,620,527 - adrA BNILDI_22955 0.37 +0.6
4,620,547 + adrA BNILDI_22955 0.39 -0.4
4,620,547 + adrA BNILDI_22955 0.39 +1.1
4,620,547 + adrA BNILDI_22955 0.39 -0.0
4,620,568 + adrA BNILDI_22955 0.41 -0.2
4,620,570 + adrA BNILDI_22955 0.41 -1.6
4,620,648 + adrA BNILDI_22955 0.48 +0.3
4,620,839 - adrA BNILDI_22955 0.65 -0.1
4,621,155 - -0.1
4,621,155 - -0.3
4,621,247 + +0.4
4,621,247 + -0.1
4,621,249 + +0.6
4,621,249 + -0.9
4,621,274 - +0.2
4,621,300 + +1.9
4,621,319 - +0.1
4,621,326 - -0.4
4,621,357 - +0.0
4,621,357 - -1.6
4,621,363 - psiF BNILDI_22960 0.11 +0.9
4,621,551 + psiF BNILDI_22960 0.70 +0.5
4,621,552 - psiF BNILDI_22960 0.70 +0.2
4,621,552 - psiF BNILDI_22960 0.70 -0.6
4,621,703 + -0.6
4,621,703 + +0.3
4,621,704 - -0.2
4,621,717 - -0.0
4,621,797 + -0.6
4,621,797 + -0.1
4,621,798 - -0.6
4,621,880 - +0.3
4,622,070 - phoA BNILDI_22965 0.21 -2.5
4,622,326 + phoA BNILDI_22965 0.40 -0.4

Or see this region's nucleotide sequence