Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yaiI and proC are separated by 119 nucleotides proC and adrA are separated by 16 nucleotides adrA and psiF are separated by 101 nucleotides psiF and phoA are separated by 118 nucleotides
BNILDI_22945: yaiI - YaiI/YqxD family protein, at 4,618,706 to 4,619,164
yaiI
BNILDI_22950: proC - pyrroline-5-carboxylate reductase, at 4,619,284 to 4,620,093
proC
BNILDI_22955: adrA - diguanylate cyclase AdrA, at 4,620,110 to 4,621,225
adrA
BNILDI_22960: psiF - phosphate starvation-inducible protein PsiF, at 4,621,327 to 4,621,647
psiF
BNILDI_22965: phoA - alkaline phosphatase, at 4,621,766 to 4,623,181
phoA
Position (kb) 4620
4621
4622 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4619.165 kb on - strand at 4619.220 kb on + strand at 4619.248 kb on + strand at 4619.386 kb on + strand, within proC at 4619.386 kb on + strand, within proC at 4619.387 kb on - strand, within proC at 4619.514 kb on + strand, within proC at 4619.730 kb on + strand, within proC at 4619.819 kb on + strand, within proC at 4619.819 kb on + strand, within proC at 4619.819 kb on + strand, within proC at 4619.820 kb on - strand, within proC at 4619.823 kb on + strand, within proC at 4619.823 kb on + strand, within proC at 4619.823 kb on + strand, within proC at 4619.823 kb on + strand, within proC at 4619.823 kb on + strand, within proC at 4619.824 kb on - strand, within proC at 4619.824 kb on - strand, within proC at 4619.824 kb on - strand, within proC at 4619.884 kb on + strand, within proC at 4619.965 kb on - strand, within proC at 4620.192 kb on + strand at 4620.232 kb on + strand, within adrA at 4620.233 kb on - strand, within adrA at 4620.296 kb on + strand, within adrA at 4620.341 kb on + strand, within adrA at 4620.402 kb on - strand, within adrA at 4620.527 kb on - strand, within adrA at 4620.547 kb on + strand, within adrA at 4620.547 kb on + strand, within adrA at 4620.547 kb on + strand, within adrA at 4620.568 kb on + strand, within adrA at 4620.570 kb on + strand, within adrA at 4620.648 kb on + strand, within adrA at 4620.839 kb on - strand, within adrA at 4621.155 kb on - strand at 4621.155 kb on - strand at 4621.247 kb on + strand at 4621.247 kb on + strand at 4621.249 kb on + strand at 4621.249 kb on + strand at 4621.274 kb on - strand at 4621.300 kb on + strand at 4621.319 kb on - strand at 4621.326 kb on - strand at 4621.357 kb on - strand at 4621.357 kb on - strand at 4621.363 kb on - strand, within psiF at 4621.551 kb on + strand, within psiF at 4621.552 kb on - strand, within psiF at 4621.552 kb on - strand, within psiF at 4621.703 kb on + strand at 4621.703 kb on + strand at 4621.704 kb on - strand at 4621.717 kb on - strand at 4621.797 kb on + strand at 4621.797 kb on + strand at 4621.798 kb on - strand at 4621.880 kb on - strand at 4622.070 kb on - strand, within phoA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,619,165 - -0.3 4,619,220 + -0.1 4,619,248 + -0.5 4,619,386 + proC BNILDI_22950 0.13 -0.5 4,619,386 + proC BNILDI_22950 0.13 -0.0 4,619,387 - proC BNILDI_22950 0.13 -0.4 4,619,514 + proC BNILDI_22950 0.28 -1.5 4,619,730 + proC BNILDI_22950 0.55 +0.2 4,619,819 + proC BNILDI_22950 0.66 -1.4 4,619,819 + proC BNILDI_22950 0.66 +1.9 4,619,819 + proC BNILDI_22950 0.66 -0.5 4,619,820 - proC BNILDI_22950 0.66 -0.5 4,619,823 + proC BNILDI_22950 0.67 -1.3 4,619,823 + proC BNILDI_22950 0.67 +3.3 4,619,823 + proC BNILDI_22950 0.67 +0.3 4,619,823 + proC BNILDI_22950 0.67 +0.1 4,619,823 + proC BNILDI_22950 0.67 +1.9 4,619,824 - proC BNILDI_22950 0.67 -1.8 4,619,824 - proC BNILDI_22950 0.67 +0.3 4,619,824 - proC BNILDI_22950 0.67 +0.3 4,619,884 + proC BNILDI_22950 0.74 +0.9 4,619,965 - proC BNILDI_22950 0.84 +1.5 4,620,192 + +1.0 4,620,232 + adrA BNILDI_22955 0.11 -0.1 4,620,233 - adrA BNILDI_22955 0.11 +0.9 4,620,296 + adrA BNILDI_22955 0.17 -1.8 4,620,341 + adrA BNILDI_22955 0.21 -0.3 4,620,402 - adrA BNILDI_22955 0.26 -0.5 4,620,527 - adrA BNILDI_22955 0.37 +0.5 4,620,547 + adrA BNILDI_22955 0.39 -0.4 4,620,547 + adrA BNILDI_22955 0.39 +1.1 4,620,547 + adrA BNILDI_22955 0.39 -0.0 4,620,568 + adrA BNILDI_22955 0.41 -0.2 4,620,570 + adrA BNILDI_22955 0.41 -1.6 4,620,648 + adrA BNILDI_22955 0.48 +0.3 4,620,839 - adrA BNILDI_22955 0.65 -0.1 4,621,155 - -0.1 4,621,155 - -0.3 4,621,247 + +0.4 4,621,247 + -0.1 4,621,249 + +0.6 4,621,249 + -0.9 4,621,274 - +0.2 4,621,300 + +1.9 4,621,319 - +0.1 4,621,326 - -0.4 4,621,357 - +0.0 4,621,357 - -1.6 4,621,363 - psiF BNILDI_22960 0.11 +0.9 4,621,551 + psiF BNILDI_22960 0.70 +0.5 4,621,552 - psiF BNILDI_22960 0.70 +0.2 4,621,552 - psiF BNILDI_22960 0.70 -0.6 4,621,703 + -0.6 4,621,703 + +0.3 4,621,704 - -0.2 4,621,717 - -0.0 4,621,797 + -0.6 4,621,797 + -0.1 4,621,798 - -0.6 4,621,880 - +0.3 4,622,070 - phoA BNILDI_22965 0.21 -2.5
Or see this region's nucleotide sequence