Strain Fitness in Escherichia coli ECRC62 around BNILDI_22845

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsecF and secD are separated by 10 nucleotidessecD and yajC are separated by 60 nucleotidesyajC and tgt are separated by 22 nucleotides BNILDI_22840: secF - Protein translocase subunit SecF, at 4,594,503 to 4,595,474 secF BNILDI_22845: secD - Protein translocase subunit SecD, at 4,595,485 to 4,597,299 secD BNILDI_22850: yajC - preprotein translocase subunit YajC, at 4,597,360 to 4,597,692 yajC BNILDI_22855: tgt - tRNA guanosine(34) transglycosylase Tgt, at 4,597,715 to 4,598,842 tgt Position (kb) 4595 4596 4597 4598Strain fitness (log2 ratio) -1 0 1 2at 4597.711 kb on - strandat 4597.737 kb on - strandat 4597.770 kb on - strandat 4597.830 kb on + strand, within tgtat 4597.872 kb on - strand, within tgtat 4597.903 kb on - strand, within tgtat 4597.903 kb on - strand, within tgtat 4597.914 kb on + strand, within tgtat 4597.930 kb on - strand, within tgtat 4597.970 kb on - strand, within tgtat 4597.970 kb on - strand, within tgtat 4597.972 kb on - strand, within tgtat 4598.059 kb on + strand, within tgtat 4598.076 kb on - strand, within tgtat 4598.076 kb on - strand, within tgtat 4598.151 kb on - strand, within tgtat 4598.151 kb on - strand, within tgtat 4598.151 kb on - strand, within tgtat 4598.151 kb on - strand, within tgtat 4598.151 kb on - strand, within tgtat 4598.151 kb on - strand, within tgtat 4598.151 kb on - strand, within tgtat 4598.151 kb on - strand, within tgtat 4598.151 kb on - strand, within tgtat 4598.173 kb on + strand, within tgtat 4598.174 kb on - strand, within tgtat 4598.174 kb on - strand, within tgtat 4598.174 kb on - strand, within tgtat 4598.235 kb on - strand, within tgtat 4598.235 kb on - strand, within tgt

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,597,711 - -0.3
4,597,737 - +1.9
4,597,770 - +1.2
4,597,830 + tgt BNILDI_22855 0.10 -0.1
4,597,872 - tgt BNILDI_22855 0.14 -0.5
4,597,903 - tgt BNILDI_22855 0.17 -0.1
4,597,903 - tgt BNILDI_22855 0.17 -0.2
4,597,914 + tgt BNILDI_22855 0.18 +0.3
4,597,930 - tgt BNILDI_22855 0.19 -0.5
4,597,970 - tgt BNILDI_22855 0.23 +0.1
4,597,970 - tgt BNILDI_22855 0.23 -0.6
4,597,972 - tgt BNILDI_22855 0.23 +0.9
4,598,059 + tgt BNILDI_22855 0.30 -0.1
4,598,076 - tgt BNILDI_22855 0.32 +0.8
4,598,076 - tgt BNILDI_22855 0.32 -0.2
4,598,151 - tgt BNILDI_22855 0.39 -0.4
4,598,151 - tgt BNILDI_22855 0.39 -1.4
4,598,151 - tgt BNILDI_22855 0.39 -0.2
4,598,151 - tgt BNILDI_22855 0.39 -0.5
4,598,151 - tgt BNILDI_22855 0.39 +0.9
4,598,151 - tgt BNILDI_22855 0.39 +1.0
4,598,151 - tgt BNILDI_22855 0.39 +0.4
4,598,151 - tgt BNILDI_22855 0.39 -0.3
4,598,151 - tgt BNILDI_22855 0.39 +0.9
4,598,173 + tgt BNILDI_22855 0.41 +0.1
4,598,174 - tgt BNILDI_22855 0.41 -0.1
4,598,174 - tgt BNILDI_22855 0.41 +0.4
4,598,174 - tgt BNILDI_22855 0.41 -1.4
4,598,235 - tgt BNILDI_22855 0.46 +1.9
4,598,235 - tgt BNILDI_22855 0.46 -0.5

Or see this region's nucleotide sequence