Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt secF and secD are separated by 10 nucleotides secD and yajC are separated by 60 nucleotides yajC and tgt are separated by 22 nucleotides
BNILDI_22840: secF - Protein translocase subunit SecF, at 4,594,503 to 4,595,474
secF
BNILDI_22845: secD - Protein translocase subunit SecD, at 4,595,485 to 4,597,299
secD
BNILDI_22850: yajC - preprotein translocase subunit YajC, at 4,597,360 to 4,597,692
yajC
BNILDI_22855: tgt - tRNA guanosine(34) transglycosylase Tgt, at 4,597,715 to 4,598,842
tgt
Position (kb)
4595
4596
4597
4598 Strain fitness (log2 ratio)
-1
0
1
2 at 4597.711 kb on - strand at 4597.737 kb on - strand at 4597.770 kb on - strand at 4597.830 kb on + strand, within tgt at 4597.872 kb on - strand, within tgt at 4597.903 kb on - strand, within tgt at 4597.903 kb on - strand, within tgt at 4597.914 kb on + strand, within tgt at 4597.930 kb on - strand, within tgt at 4597.970 kb on - strand, within tgt at 4597.970 kb on - strand, within tgt at 4597.972 kb on - strand, within tgt at 4598.059 kb on + strand, within tgt at 4598.076 kb on - strand, within tgt at 4598.076 kb on - strand, within tgt at 4598.151 kb on - strand, within tgt at 4598.151 kb on - strand, within tgt at 4598.151 kb on - strand, within tgt at 4598.151 kb on - strand, within tgt at 4598.151 kb on - strand, within tgt at 4598.151 kb on - strand, within tgt at 4598.151 kb on - strand, within tgt at 4598.151 kb on - strand, within tgt at 4598.151 kb on - strand, within tgt at 4598.173 kb on + strand, within tgt at 4598.174 kb on - strand, within tgt at 4598.174 kb on - strand, within tgt at 4598.174 kb on - strand, within tgt at 4598.235 kb on - strand, within tgt at 4598.235 kb on - strand, within tgt
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,597,711 - -0.3 4,597,737 - +1.9 4,597,770 - +1.2 4,597,830 + tgt BNILDI_22855 0.10 -0.1 4,597,872 - tgt BNILDI_22855 0.14 -0.5 4,597,903 - tgt BNILDI_22855 0.17 -0.1 4,597,903 - tgt BNILDI_22855 0.17 -0.2 4,597,914 + tgt BNILDI_22855 0.18 +0.3 4,597,930 - tgt BNILDI_22855 0.19 -0.5 4,597,970 - tgt BNILDI_22855 0.23 +0.1 4,597,970 - tgt BNILDI_22855 0.23 -0.6 4,597,972 - tgt BNILDI_22855 0.23 +0.9 4,598,059 + tgt BNILDI_22855 0.30 -0.1 4,598,076 - tgt BNILDI_22855 0.32 +0.8 4,598,076 - tgt BNILDI_22855 0.32 -0.2 4,598,151 - tgt BNILDI_22855 0.39 -0.4 4,598,151 - tgt BNILDI_22855 0.39 -1.4 4,598,151 - tgt BNILDI_22855 0.39 -0.2 4,598,151 - tgt BNILDI_22855 0.39 -0.5 4,598,151 - tgt BNILDI_22855 0.39 +0.9 4,598,151 - tgt BNILDI_22855 0.39 +1.0 4,598,151 - tgt BNILDI_22855 0.39 +0.4 4,598,151 - tgt BNILDI_22855 0.39 -0.3 4,598,151 - tgt BNILDI_22855 0.39 +0.9 4,598,173 + tgt BNILDI_22855 0.41 +0.1 4,598,174 - tgt BNILDI_22855 0.41 -0.1 4,598,174 - tgt BNILDI_22855 0.41 +0.4 4,598,174 - tgt BNILDI_22855 0.41 -1.4 4,598,235 - tgt BNILDI_22855 0.46 +1.9 4,598,235 - tgt BNILDI_22855 0.46 -0.5
Or see this region's nucleotide sequence