Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bor and rzpD are separated by 31 nucleotides rzpD and rrrD overlap by 4 nucleotides rrrD and essD overlap by 1 nucleotides essD and BNILDI_22150 are separated by 588 nucleotides
BNILDI_22130: bor - serum resistance lipoprotein Bor, at 4,451,753 to 4,452,046
bor
BNILDI_22135: rzpD - prophage endopeptidase RzpD, at 4,452,078 to 4,452,539
rzpD
BNILDI_22140: rrrD - lysozyme RrrD, at 4,452,536 to 4,453,033
rrrD
BNILDI_22145: essD - phage lysis protein EssD, at 4,453,033 to 4,453,248
essD
BNILDI_22150: BNILDI_22150 - Outer membrane porin protein LC, at 4,453,837 to 4,454,934
_22150
Position (kb) 4453
4454 Strain fitness (log2 ratio) -1
0
1
2 at 4452.079 kb on + strand at 4452.098 kb on + strand at 4452.099 kb on - strand at 4452.100 kb on + strand at 4452.324 kb on + strand, within rzpD at 4452.325 kb on - strand, within rzpD at 4452.325 kb on - strand, within rzpD at 4452.325 kb on - strand, within rzpD at 4452.386 kb on + strand, within rzpD at 4452.402 kb on + strand, within rzpD at 4452.518 kb on + strand at 4452.615 kb on + strand, within rrrD at 4452.615 kb on + strand, within rrrD at 4452.616 kb on - strand, within rrrD at 4452.616 kb on - strand, within rrrD at 4452.666 kb on - strand, within rrrD at 4452.727 kb on - strand, within rrrD at 4452.727 kb on - strand, within rrrD at 4452.767 kb on - strand, within rrrD at 4452.768 kb on + strand, within rrrD at 4452.776 kb on - strand, within rrrD at 4452.835 kb on + strand, within rrrD at 4452.837 kb on + strand, within rrrD at 4452.838 kb on - strand, within rrrD at 4452.881 kb on + strand, within rrrD at 4452.882 kb on - strand, within rrrD at 4452.882 kb on - strand, within rrrD at 4452.890 kb on + strand, within rrrD at 4452.890 kb on + strand, within rrrD at 4452.914 kb on + strand, within rrrD at 4452.919 kb on - strand, within rrrD at 4452.919 kb on - strand, within rrrD at 4452.977 kb on - strand, within rrrD at 4453.020 kb on - strand at 4453.035 kb on - strand at 4453.132 kb on + strand, within essD at 4453.133 kb on - strand, within essD at 4453.133 kb on - strand, within essD at 4453.175 kb on - strand, within essD at 4453.212 kb on - strand, within essD at 4453.233 kb on + strand at 4453.233 kb on + strand at 4453.290 kb on - strand at 4453.296 kb on + strand at 4453.364 kb on - strand at 4453.367 kb on - strand at 4453.465 kb on - strand at 4454.001 kb on + strand, within BNILDI_22150 at 4454.001 kb on + strand, within BNILDI_22150 at 4454.002 kb on - strand, within BNILDI_22150 at 4454.004 kb on + strand, within BNILDI_22150 at 4454.004 kb on + strand, within BNILDI_22150 at 4454.005 kb on - strand, within BNILDI_22150 at 4454.005 kb on - strand, within BNILDI_22150 at 4454.009 kb on - strand, within BNILDI_22150 at 4454.009 kb on - strand, within BNILDI_22150 at 4454.009 kb on - strand, within BNILDI_22150 at 4454.009 kb on - strand, within BNILDI_22150 at 4454.192 kb on - strand, within BNILDI_22150 at 4454.192 kb on - strand, within BNILDI_22150 at 4454.198 kb on + strand, within BNILDI_22150 at 4454.199 kb on - strand, within BNILDI_22150
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,452,079 + -1.2 4,452,098 + -0.3 4,452,099 - -0.0 4,452,100 + +0.6 4,452,324 + rzpD BNILDI_22135 0.53 +0.4 4,452,325 - rzpD BNILDI_22135 0.53 +0.1 4,452,325 - rzpD BNILDI_22135 0.53 +0.5 4,452,325 - rzpD BNILDI_22135 0.53 -0.1 4,452,386 + rzpD BNILDI_22135 0.67 +0.9 4,452,402 + rzpD BNILDI_22135 0.70 -0.7 4,452,518 + -0.4 4,452,615 + rrrD BNILDI_22140 0.16 -0.1 4,452,615 + rrrD BNILDI_22140 0.16 -1.4 4,452,616 - rrrD BNILDI_22140 0.16 +1.3 4,452,616 - rrrD BNILDI_22140 0.16 +1.1 4,452,666 - rrrD BNILDI_22140 0.26 +1.0 4,452,727 - rrrD BNILDI_22140 0.38 +0.5 4,452,727 - rrrD BNILDI_22140 0.38 +0.9 4,452,767 - rrrD BNILDI_22140 0.46 -0.2 4,452,768 + rrrD BNILDI_22140 0.47 -0.4 4,452,776 - rrrD BNILDI_22140 0.48 +0.6 4,452,835 + rrrD BNILDI_22140 0.60 +0.5 4,452,837 + rrrD BNILDI_22140 0.60 +0.6 4,452,838 - rrrD BNILDI_22140 0.61 +0.9 4,452,881 + rrrD BNILDI_22140 0.69 +0.5 4,452,882 - rrrD BNILDI_22140 0.69 +1.1 4,452,882 - rrrD BNILDI_22140 0.69 -0.6 4,452,890 + rrrD BNILDI_22140 0.71 -0.0 4,452,890 + rrrD BNILDI_22140 0.71 +0.7 4,452,914 + rrrD BNILDI_22140 0.76 +0.1 4,452,919 - rrrD BNILDI_22140 0.77 -0.4 4,452,919 - rrrD BNILDI_22140 0.77 +0.1 4,452,977 - rrrD BNILDI_22140 0.89 +0.6 4,453,020 - +0.1 4,453,035 - -0.6 4,453,132 + essD BNILDI_22145 0.46 +0.6 4,453,133 - essD BNILDI_22145 0.46 +0.1 4,453,133 - essD BNILDI_22145 0.46 +2.6 4,453,175 - essD BNILDI_22145 0.66 +1.1 4,453,212 - essD BNILDI_22145 0.83 -0.1 4,453,233 + +0.5 4,453,233 + +2.2 4,453,290 - -1.0 4,453,296 + -0.0 4,453,364 - +0.6 4,453,367 - +1.0 4,453,465 - +0.2 4,454,001 + BNILDI_22150 0.15 -0.7 4,454,001 + BNILDI_22150 0.15 -0.1 4,454,002 - BNILDI_22150 0.15 -0.4 4,454,004 + BNILDI_22150 0.15 +0.6 4,454,004 + BNILDI_22150 0.15 +0.1 4,454,005 - BNILDI_22150 0.15 +1.7 4,454,005 - BNILDI_22150 0.15 +1.4 4,454,009 - BNILDI_22150 0.16 +0.1 4,454,009 - BNILDI_22150 0.16 +1.3 4,454,009 - BNILDI_22150 0.16 +0.7 4,454,009 - BNILDI_22150 0.16 -0.4 4,454,192 - BNILDI_22150 0.32 -0.1 4,454,192 - BNILDI_22150 0.32 -0.8 4,454,198 + BNILDI_22150 0.33 -0.3 4,454,199 - BNILDI_22150 0.33 -0.4
Or see this region's nucleotide sequence