Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybcW and BNILDI_22125 are separated by 285 nucleotides BNILDI_22125 and bor are separated by 290 nucleotides bor and rzpD are separated by 31 nucleotides rzpD and rrrD overlap by 4 nucleotides rrrD and essD overlap by 1 nucleotides
BNILDI_22120: ybcW - Uncharacterized protein YbcW, at 4,450,560 to 4,450,766
ybcW
BNILDI_22125: BNILDI_22125 - DUF1398 domain-containing protein, at 4,451,052 to 4,451,462
_22125
BNILDI_22130: bor - serum resistance lipoprotein Bor, at 4,451,753 to 4,452,046
bor
BNILDI_22135: rzpD - prophage endopeptidase RzpD, at 4,452,078 to 4,452,539
rzpD
BNILDI_22140: rrrD - lysozyme RrrD, at 4,452,536 to 4,453,033
rrrD
BNILDI_22145: essD - phage lysis protein EssD, at 4,453,033 to 4,453,248
essD
Position (kb) 4451
4452
4453 Strain fitness (log2 ratio) -1
0
1
2 at 4450.828 kb on + strand at 4450.853 kb on + strand at 4450.854 kb on - strand at 4450.857 kb on + strand at 4450.857 kb on + strand at 4450.858 kb on - strand at 4450.858 kb on - strand at 4450.858 kb on - strand at 4450.873 kb on - strand at 4450.873 kb on - strand at 4450.927 kb on - strand at 4451.008 kb on + strand at 4451.048 kb on - strand at 4451.121 kb on + strand, within BNILDI_22125 at 4451.168 kb on - strand, within BNILDI_22125 at 4451.468 kb on - strand at 4451.516 kb on + strand at 4451.523 kb on - strand at 4451.604 kb on - strand at 4451.646 kb on - strand at 4451.654 kb on - strand at 4451.654 kb on - strand at 4451.714 kb on - strand at 4451.746 kb on + strand at 4451.791 kb on + strand, within bor at 4451.791 kb on + strand, within bor at 4451.792 kb on - strand, within bor at 4451.992 kb on + strand, within bor at 4451.995 kb on + strand, within bor at 4452.079 kb on + strand at 4452.098 kb on + strand at 4452.099 kb on - strand at 4452.100 kb on + strand at 4452.324 kb on + strand, within rzpD at 4452.325 kb on - strand, within rzpD at 4452.325 kb on - strand, within rzpD at 4452.325 kb on - strand, within rzpD at 4452.386 kb on + strand, within rzpD at 4452.402 kb on + strand, within rzpD at 4452.518 kb on + strand at 4452.615 kb on + strand, within rrrD at 4452.615 kb on + strand, within rrrD at 4452.616 kb on - strand, within rrrD at 4452.616 kb on - strand, within rrrD at 4452.666 kb on - strand, within rrrD at 4452.727 kb on - strand, within rrrD at 4452.727 kb on - strand, within rrrD at 4452.767 kb on - strand, within rrrD at 4452.768 kb on + strand, within rrrD at 4452.776 kb on - strand, within rrrD at 4452.835 kb on + strand, within rrrD at 4452.837 kb on + strand, within rrrD at 4452.838 kb on - strand, within rrrD at 4452.881 kb on + strand, within rrrD at 4452.882 kb on - strand, within rrrD at 4452.882 kb on - strand, within rrrD at 4452.890 kb on + strand, within rrrD at 4452.890 kb on + strand, within rrrD at 4452.914 kb on + strand, within rrrD at 4452.919 kb on - strand, within rrrD at 4452.919 kb on - strand, within rrrD at 4452.977 kb on - strand, within rrrD at 4453.020 kb on - strand at 4453.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,450,828 + -1.3 4,450,853 + -0.1 4,450,854 - +0.3 4,450,857 + +0.4 4,450,857 + -0.4 4,450,858 - +0.3 4,450,858 - +0.9 4,450,858 - -0.6 4,450,873 - -1.5 4,450,873 - +0.2 4,450,927 - -0.4 4,451,008 + -0.6 4,451,048 - -0.4 4,451,121 + BNILDI_22125 0.17 +1.9 4,451,168 - BNILDI_22125 0.28 +0.0 4,451,468 - -0.3 4,451,516 + -0.2 4,451,523 - +0.6 4,451,604 - -0.4 4,451,646 - +0.3 4,451,654 - -0.3 4,451,654 - +0.1 4,451,714 - +0.2 4,451,746 + -1.2 4,451,791 + bor BNILDI_22130 0.13 +0.3 4,451,791 + bor BNILDI_22130 0.13 +0.2 4,451,792 - bor BNILDI_22130 0.13 +1.9 4,451,992 + bor BNILDI_22130 0.81 +1.7 4,451,995 + bor BNILDI_22130 0.82 -0.1 4,452,079 + -1.2 4,452,098 + -0.3 4,452,099 - -0.0 4,452,100 + +0.6 4,452,324 + rzpD BNILDI_22135 0.53 +0.4 4,452,325 - rzpD BNILDI_22135 0.53 +0.1 4,452,325 - rzpD BNILDI_22135 0.53 +0.5 4,452,325 - rzpD BNILDI_22135 0.53 -0.1 4,452,386 + rzpD BNILDI_22135 0.67 +0.9 4,452,402 + rzpD BNILDI_22135 0.70 -0.7 4,452,518 + -0.4 4,452,615 + rrrD BNILDI_22140 0.16 -0.1 4,452,615 + rrrD BNILDI_22140 0.16 -1.4 4,452,616 - rrrD BNILDI_22140 0.16 +1.3 4,452,616 - rrrD BNILDI_22140 0.16 +1.1 4,452,666 - rrrD BNILDI_22140 0.26 +1.0 4,452,727 - rrrD BNILDI_22140 0.38 +0.5 4,452,727 - rrrD BNILDI_22140 0.38 +0.9 4,452,767 - rrrD BNILDI_22140 0.46 -0.2 4,452,768 + rrrD BNILDI_22140 0.47 -0.4 4,452,776 - rrrD BNILDI_22140 0.48 +0.6 4,452,835 + rrrD BNILDI_22140 0.60 +0.5 4,452,837 + rrrD BNILDI_22140 0.60 +0.6 4,452,838 - rrrD BNILDI_22140 0.61 +0.9 4,452,881 + rrrD BNILDI_22140 0.69 +0.5 4,452,882 - rrrD BNILDI_22140 0.69 +1.1 4,452,882 - rrrD BNILDI_22140 0.69 -0.6 4,452,890 + rrrD BNILDI_22140 0.71 -0.0 4,452,890 + rrrD BNILDI_22140 0.71 +0.7 4,452,914 + rrrD BNILDI_22140 0.76 +0.1 4,452,919 - rrrD BNILDI_22140 0.77 -0.4 4,452,919 - rrrD BNILDI_22140 0.77 +0.1 4,452,977 - rrrD BNILDI_22140 0.89 +0.6 4,453,020 - +0.1 4,453,035 - -0.6
Or see this region's nucleotide sequence