Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kdpD and kdpE overlap by 4 nucleotides kdpE and speFL are separated by 274 nucleotides speFL and speF are separated by 310 nucleotides
BNILDI_21460: kdpD - two-component system sensor histidine kinase KdpD, at 4,316,542 to 4,319,226
kdpD
BNILDI_21465: kdpE - two-component system response regulator KdpE, at 4,319,223 to 4,319,900
kdpE
BNILDI_21470: speFL - Leader peptide SpeFL, at 4,320,175 to 4,320,279
speFL
BNILDI_21475: speF - ornithine decarboxylase SpeF, at 4,320,590 to 4,322,788
speF
Position (kb) 4320
4321 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4319.220 kb on + strand at 4319.308 kb on - strand, within kdpE at 4319.369 kb on + strand, within kdpE at 4319.515 kb on - strand, within kdpE at 4319.515 kb on - strand, within kdpE at 4319.569 kb on + strand, within kdpE at 4319.717 kb on + strand, within kdpE at 4319.793 kb on + strand, within kdpE at 4319.808 kb on - strand, within kdpE at 4320.130 kb on + strand at 4320.135 kb on + strand at 4320.173 kb on - strand at 4320.205 kb on - strand, within speFL at 4320.325 kb on - strand at 4320.363 kb on + strand at 4320.366 kb on - strand at 4320.459 kb on + strand at 4320.490 kb on + strand at 4320.673 kb on + strand at 4320.853 kb on + strand, within speF at 4320.877 kb on - strand, within speF at 4320.941 kb on + strand, within speF at 4320.942 kb on - strand, within speF at 4320.942 kb on - strand, within speF at 4320.947 kb on - strand, within speF at 4320.959 kb on - strand, within speF at 4321.081 kb on - strand, within speF at 4321.081 kb on - strand, within speF at 4321.120 kb on + strand, within speF at 4321.120 kb on + strand, within speF at 4321.120 kb on + strand, within speF at 4321.121 kb on - strand, within speF at 4321.121 kb on - strand, within speF at 4321.121 kb on - strand, within speF at 4321.184 kb on - strand, within speF at 4321.198 kb on + strand, within speF at 4321.210 kb on - strand, within speF
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,319,220 + +0.2 4,319,308 - kdpE BNILDI_21465 0.13 +2.9 4,319,369 + kdpE BNILDI_21465 0.22 -0.4 4,319,515 - kdpE BNILDI_21465 0.43 -0.2 4,319,515 - kdpE BNILDI_21465 0.43 -2.2 4,319,569 + kdpE BNILDI_21465 0.51 +0.6 4,319,717 + kdpE BNILDI_21465 0.73 -0.6 4,319,793 + kdpE BNILDI_21465 0.84 +0.3 4,319,808 - kdpE BNILDI_21465 0.86 -0.6 4,320,130 + -0.1 4,320,135 + -0.4 4,320,173 - +0.6 4,320,205 - speFL BNILDI_21470 0.29 +0.6 4,320,325 - +0.3 4,320,363 + -0.4 4,320,366 - -0.3 4,320,459 + +1.0 4,320,490 + -0.3 4,320,673 + +0.0 4,320,853 + speF BNILDI_21475 0.12 -1.2 4,320,877 - speF BNILDI_21475 0.13 -0.6 4,320,941 + speF BNILDI_21475 0.16 -2.0 4,320,942 - speF BNILDI_21475 0.16 -0.2 4,320,942 - speF BNILDI_21475 0.16 +0.1 4,320,947 - speF BNILDI_21475 0.16 +0.0 4,320,959 - speF BNILDI_21475 0.17 +2.6 4,321,081 - speF BNILDI_21475 0.22 -0.9 4,321,081 - speF BNILDI_21475 0.22 -2.3 4,321,120 + speF BNILDI_21475 0.24 +1.7 4,321,120 + speF BNILDI_21475 0.24 -0.5 4,321,120 + speF BNILDI_21475 0.24 -0.2 4,321,121 - speF BNILDI_21475 0.24 +0.2 4,321,121 - speF BNILDI_21475 0.24 +0.6 4,321,121 - speF BNILDI_21475 0.24 +0.1 4,321,184 - speF BNILDI_21475 0.27 -2.1 4,321,198 + speF BNILDI_21475 0.28 +0.9 4,321,210 - speF BNILDI_21475 0.28 +0.6
Or see this region's nucleotide sequence