Strain Fitness in Escherichia coli ECRC62 around BNILDI_21260

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttolQ and ybgC overlap by 4 nucleotidesybgC and ybgE are separated by 149 nucleotidesybgE and cydX overlap by 1 nucleotidescydX and cydB are separated by 14 nucleotides BNILDI_21250: tolQ - Tol-Pal system protein TolQ, at 4,270,106 to 4,270,798 tolQ BNILDI_21255: ybgC - tol-pal system-associated acyl-CoA thioesterase, at 4,270,795 to 4,271,199 ybgC BNILDI_21260: ybgE - cyd operon protein YbgE, at 4,271,349 to 4,271,642 ybgE BNILDI_21265: cydX - cytochrome bd-I oxidase subunit CydX, at 4,271,642 to 4,271,755 cydX BNILDI_21270: cydB - cytochrome d ubiquinol oxidase subunit II, at 4,271,770 to 4,272,909 cydB Position (kb) 4271 4272Strain fitness (log2 ratio) -1 0 1 2at 4270.384 kb on - strand, within tolQat 4270.459 kb on + strand, within tolQat 4270.466 kb on - strand, within tolQat 4270.896 kb on + strand, within ybgCat 4270.897 kb on - strand, within ybgCat 4270.915 kb on - strand, within ybgCat 4270.915 kb on - strand, within ybgCat 4270.966 kb on + strand, within ybgCat 4271.004 kb on - strand, within ybgCat 4271.019 kb on + strand, within ybgCat 4271.019 kb on + strand, within ybgCat 4271.020 kb on - strand, within ybgCat 4271.024 kb on - strand, within ybgCat 4271.129 kb on + strand, within ybgCat 4271.130 kb on - strand, within ybgCat 4271.152 kb on - strand, within ybgCat 4271.194 kb on - strandat 4271.203 kb on - strandat 4271.203 kb on - strandat 4271.246 kb on + strandat 4271.250 kb on - strandat 4271.250 kb on - strandat 4271.251 kb on + strandat 4271.252 kb on - strandat 4271.325 kb on + strandat 4271.487 kb on + strand, within ybgEat 4271.549 kb on + strand, within ybgEat 4271.549 kb on + strand, within ybgEat 4271.550 kb on - strand, within ybgE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,270,384 - tolQ BNILDI_21250 0.40 -0.6
4,270,459 + tolQ BNILDI_21250 0.51 +1.3
4,270,466 - tolQ BNILDI_21250 0.52 -0.1
4,270,896 + ybgC BNILDI_21255 0.25 -0.4
4,270,897 - ybgC BNILDI_21255 0.25 -0.6
4,270,915 - ybgC BNILDI_21255 0.30 +0.7
4,270,915 - ybgC BNILDI_21255 0.30 -0.7
4,270,966 + ybgC BNILDI_21255 0.42 -0.7
4,271,004 - ybgC BNILDI_21255 0.52 -1.2
4,271,019 + ybgC BNILDI_21255 0.55 -0.1
4,271,019 + ybgC BNILDI_21255 0.55 -1.7
4,271,020 - ybgC BNILDI_21255 0.56 +0.8
4,271,024 - ybgC BNILDI_21255 0.57 -1.4
4,271,129 + ybgC BNILDI_21255 0.82 +1.3
4,271,130 - ybgC BNILDI_21255 0.83 -0.6
4,271,152 - ybgC BNILDI_21255 0.88 +0.3
4,271,194 - -0.2
4,271,203 - +0.9
4,271,203 - -0.1
4,271,246 + +1.9
4,271,250 - +0.4
4,271,250 - +0.6
4,271,251 + +2.6
4,271,252 - +0.5
4,271,325 + -0.4
4,271,487 + ybgE BNILDI_21260 0.47 +1.5
4,271,549 + ybgE BNILDI_21260 0.68 +0.2
4,271,549 + ybgE BNILDI_21260 0.68 +1.0
4,271,550 - ybgE BNILDI_21260 0.68 -1.1

Or see this region's nucleotide sequence