Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhH and ybhD are separated by 183 nucleotides ybhD and pgl are separated by 40 nucleotides
BNILDI_21090: ybhH - 4-oxalomesaconate tautomerase, at 4,244,231 to 4,245,283
ybhH
BNILDI_21095: ybhD - Uncharacterized HTH-type transcriptional regulator YbhD, at 4,245,467 to 4,246,420
ybhD
BNILDI_21100: pgl - 6-phosphogluconolactonase, at 4,246,461 to 4,247,456
pgl
Position (kb) 4245
4246
4247 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4244.485 kb on - strand, within ybhH at 4244.525 kb on - strand, within ybhH at 4244.616 kb on - strand, within ybhH at 4244.903 kb on - strand, within ybhH at 4244.999 kb on - strand, within ybhH at 4244.999 kb on - strand, within ybhH at 4244.999 kb on - strand, within ybhH at 4244.999 kb on - strand, within ybhH at 4244.999 kb on - strand, within ybhH at 4245.010 kb on + strand, within ybhH at 4245.011 kb on - strand, within ybhH at 4245.020 kb on - strand, within ybhH at 4245.043 kb on + strand, within ybhH at 4245.044 kb on - strand, within ybhH at 4245.466 kb on - strand at 4245.487 kb on + strand at 4245.623 kb on - strand, within ybhD at 4245.638 kb on - strand, within ybhD at 4245.906 kb on + strand, within ybhD at 4245.907 kb on - strand, within ybhD at 4246.037 kb on + strand, within ybhD at 4246.053 kb on + strand, within ybhD at 4246.083 kb on + strand, within ybhD at 4246.260 kb on + strand, within ybhD at 4246.404 kb on + strand at 4246.414 kb on - strand at 4246.421 kb on + strand at 4246.422 kb on - strand at 4246.527 kb on + strand at 4246.595 kb on - strand, within pgl at 4246.595 kb on - strand, within pgl at 4246.752 kb on - strand, within pgl at 4246.827 kb on - strand, within pgl at 4246.885 kb on + strand, within pgl at 4246.892 kb on - strand, within pgl at 4246.911 kb on + strand, within pgl at 4247.020 kb on - strand, within pgl at 4247.039 kb on + strand, within pgl at 4247.058 kb on - strand, within pgl at 4247.156 kb on - strand, within pgl at 4247.164 kb on - strand, within pgl at 4247.164 kb on - strand, within pgl at 4247.198 kb on + strand, within pgl at 4247.305 kb on + strand, within pgl at 4247.305 kb on + strand, within pgl at 4247.305 kb on + strand, within pgl at 4247.306 kb on - strand, within pgl at 4247.306 kb on - strand, within pgl at 4247.306 kb on - strand, within pgl
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,244,485 - ybhH BNILDI_21090 0.24 +2.5 4,244,525 - ybhH BNILDI_21090 0.28 -1.5 4,244,616 - ybhH BNILDI_21090 0.37 -0.1 4,244,903 - ybhH BNILDI_21090 0.64 +0.9 4,244,999 - ybhH BNILDI_21090 0.73 -0.6 4,244,999 - ybhH BNILDI_21090 0.73 -0.2 4,244,999 - ybhH BNILDI_21090 0.73 -0.7 4,244,999 - ybhH BNILDI_21090 0.73 -0.4 4,244,999 - ybhH BNILDI_21090 0.73 +0.5 4,245,010 + ybhH BNILDI_21090 0.74 +0.0 4,245,011 - ybhH BNILDI_21090 0.74 -0.3 4,245,020 - ybhH BNILDI_21090 0.75 +0.9 4,245,043 + ybhH BNILDI_21090 0.77 +0.5 4,245,044 - ybhH BNILDI_21090 0.77 -0.1 4,245,466 - +1.0 4,245,487 + +0.1 4,245,623 - ybhD BNILDI_21095 0.16 +1.3 4,245,638 - ybhD BNILDI_21095 0.18 -1.8 4,245,906 + ybhD BNILDI_21095 0.46 +1.4 4,245,907 - ybhD BNILDI_21095 0.46 +0.1 4,246,037 + ybhD BNILDI_21095 0.60 -2.3 4,246,053 + ybhD BNILDI_21095 0.61 -1.0 4,246,083 + ybhD BNILDI_21095 0.65 +0.2 4,246,260 + ybhD BNILDI_21095 0.83 -0.5 4,246,404 + -0.2 4,246,414 - +1.1 4,246,421 + -0.1 4,246,422 - +0.9 4,246,527 + -0.3 4,246,595 - pgl BNILDI_21100 0.13 +0.9 4,246,595 - pgl BNILDI_21100 0.13 +0.9 4,246,752 - pgl BNILDI_21100 0.29 -2.5 4,246,827 - pgl BNILDI_21100 0.37 +0.5 4,246,885 + pgl BNILDI_21100 0.43 -0.5 4,246,892 - pgl BNILDI_21100 0.43 -0.6 4,246,911 + pgl BNILDI_21100 0.45 -0.8 4,247,020 - pgl BNILDI_21100 0.56 -0.3 4,247,039 + pgl BNILDI_21100 0.58 -1.5 4,247,058 - pgl BNILDI_21100 0.60 -0.3 4,247,156 - pgl BNILDI_21100 0.70 +0.3 4,247,164 - pgl BNILDI_21100 0.71 -1.0 4,247,164 - pgl BNILDI_21100 0.71 +1.5 4,247,198 + pgl BNILDI_21100 0.74 +0.1 4,247,305 + pgl BNILDI_21100 0.85 -1.1 4,247,305 + pgl BNILDI_21100 0.85 -2.1 4,247,305 + pgl BNILDI_21100 0.85 +0.3 4,247,306 - pgl BNILDI_21100 0.85 +2.9 4,247,306 - pgl BNILDI_21100 0.85 -0.1 4,247,306 - pgl BNILDI_21100 0.85 -0.2
Or see this region's nucleotide sequence