Strain Fitness in Escherichia coli ECRC62 around BNILDI_19930

Experiment: Bas61

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas61
3,996,940	-	yccT	BNILDI_19920	0.77	-0.2
3,996,972	+	yccT	BNILDI_19920	0.82	+0.8
3,996,972	+	yccT	BNILDI_19920	0.82	-0.2
3,997,016	-	yccT	BNILDI_19920	0.89	-0.8
3,997,126	-				+0.2
3,997,138	+				-0.2
3,997,138	+				-0.4
3,997,139	-				+0.8
3,997,146	+				+0.6
3,997,151	+				-0.6
3,997,167	+				+0.8
3,997,168	-				-0.4
3,997,168	-				-0.6
3,997,180	-				-0.1
3,997,306	+	mgsA	BNILDI_19925	0.26	-0.4
3,997,306	+	mgsA	BNILDI_19925	0.26	-0.6
3,997,307	-	mgsA	BNILDI_19925	0.27	+0.1
3,997,311	+	mgsA	BNILDI_19925	0.27	+0.4
3,997,463	-	mgsA	BNILDI_19925	0.61	-0.0
3,997,621	-				-0.1
3,997,621	-				-0.7
3,997,676	+				+0.0
3,997,790	+				+1.8
3,997,790	+				-1.0
3,997,790	+				+0.1
3,997,791	-				-0.7
3,997,791	-				-0.3
3,997,791	-				-0.3
3,997,957	-	helD	BNILDI_19930	0.14	+1.8
3,998,024	+	helD	BNILDI_19930	0.17	-0.4
3,998,225	+	helD	BNILDI_19930	0.27	-0.4
3,998,225	+	helD	BNILDI_19930	0.27	+0.4
3,998,236	+	helD	BNILDI_19930	0.27	-0.5
3,998,430	+	helD	BNILDI_19930	0.37	+0.3
3,998,565	+	helD	BNILDI_19930	0.43	+0.1
3,998,565	+	helD	BNILDI_19930	0.43	-0.3
3,998,651	-	helD	BNILDI_19930	0.47	+0.0
3,998,710	-	helD	BNILDI_19930	0.50	-0.6
3,998,710	-	helD	BNILDI_19930	0.50	+0.3
3,998,808	+	helD	BNILDI_19930	0.55	+0.0
3,998,884	-	helD	BNILDI_19930	0.59	-1.8
3,998,886	+	helD	BNILDI_19930	0.59	+0.8
3,998,887	-	helD	BNILDI_19930	0.59	+0.1
3,998,932	-	helD	BNILDI_19930	0.61	-0.1
3,998,932	-	helD	BNILDI_19930	0.61	+1.8
3,999,201	-	helD	BNILDI_19930	0.74	+0.8
3,999,201	-	helD	BNILDI_19930	0.74	+0.8
3,999,201	-	helD	BNILDI_19930	0.74	-0.1
3,999,210	+	helD	BNILDI_19930	0.75	-1.0
3,999,258	+	helD	BNILDI_19930	0.77	-1.0
3,999,324	+	helD	BNILDI_19930	0.80	-0.5
3,999,325	-	helD	BNILDI_19930	0.80	-2.0
3,999,325	-	helD	BNILDI_19930	0.80	-0.4
3,999,738	-				+0.6
3,999,769	-				-0.8
3,999,839	-				-1.5
3,999,851	+				-1.2
3,999,852	-				+0.0
3,999,936	-	yccF	BNILDI_19935	0.19	-0.0
3,999,938	+	yccF	BNILDI_19935	0.19	+0.2
3,999,938	+	yccF	BNILDI_19935	0.19	-0.8
3,999,939	-	yccF	BNILDI_19935	0.19	+0.6
3,999,939	-	yccF	BNILDI_19935	0.19	-0.4
3,999,939	-	yccF	BNILDI_19935	0.19	+0.6
4,000,081	+	yccF	BNILDI_19935	0.51	-0.4
4,000,322	-				+0.2
4,000,322	-				-2.1
4,000,365	+				+0.8
4,000,429	+				-1.1
4,000,429	+				-0.4
4,000,558	+	yccS	BNILDI_19940	0.12	-0.6
4,000,650	+	yccS	BNILDI_19940	0.16	-0.9
4,000,689	+	yccS	BNILDI_19940	0.18	+1.1
4,000,689	+	yccS	BNILDI_19940	0.18	-0.6
4,000,689	+	yccS	BNILDI_19940	0.18	+1.8
4,000,690	-	yccS	BNILDI_19940	0.18	+0.4
4,000,694	+	yccS	BNILDI_19940	0.18	-0.3
4,000,694	+	yccS	BNILDI_19940	0.18	-0.2
4,000,694	+	yccS	BNILDI_19940	0.18	+0.5
4,000,694	+	yccS	BNILDI_19940	0.18	+0.5
4,000,695	-	yccS	BNILDI_19940	0.18	+0.8
4,000,713	+	yccS	BNILDI_19940	0.19	+0.6
4,000,714	-	yccS	BNILDI_19940	0.19	-1.4
4,000,714	-	yccS	BNILDI_19940	0.19	+0.0