Strain Fitness in Escherichia coli ECRC62 around BNILDI_19505

Experiment: Bas61

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas61
3,918,168	+	clsC	BNILDI_19500	0.33	+0.4
3,918,241	+	clsC	BNILDI_19500	0.38	+0.6
3,918,251	+	clsC	BNILDI_19500	0.38	+0.6
3,918,354	+	clsC	BNILDI_19500	0.45	+0.1
3,918,354	+	clsC	BNILDI_19500	0.45	-0.1
3,918,357	+	clsC	BNILDI_19500	0.46	+0.5
3,918,408	+	clsC	BNILDI_19500	0.49	+0.0
3,918,409	-	clsC	BNILDI_19500	0.49	+2.8
3,918,435	+	clsC	BNILDI_19500	0.51	+0.8
3,918,436	-	clsC	BNILDI_19500	0.51	+0.6
3,918,452	+	clsC	BNILDI_19500	0.52	-1.0
3,918,612	+	clsC	BNILDI_19500	0.63	+0.0
3,918,613	-	clsC	BNILDI_19500	0.63	-0.2
3,918,663	-	clsC	BNILDI_19500	0.66	+0.6
3,918,752	-	clsC	BNILDI_19500	0.72	-0.4
3,918,831	+	clsC	BNILDI_19500	0.78	-0.4
3,918,855	-	clsC	BNILDI_19500	0.79	-0.0
3,918,939	-	clsC	BNILDI_19500	0.85	+2.8
3,918,939	-	clsC	BNILDI_19500	0.85	+0.8
3,918,955	+	clsC	BNILDI_19500	0.86	-0.4
3,918,955	+	clsC	BNILDI_19500	0.86	+0.2
3,918,974	+	clsC	BNILDI_19500	0.87	-0.1
3,919,175	+	ymdB	BNILDI_19505	0.13	-1.0
3,919,175	+	ymdB	BNILDI_19505	0.13	-0.5
3,919,176	-	ymdB	BNILDI_19505	0.13	+0.8
3,919,176	-	ymdB	BNILDI_19505	0.13	-3.9
3,919,176	-	ymdB	BNILDI_19505	0.13	+0.3
3,919,177	+	ymdB	BNILDI_19505	0.13	+0.8
3,919,177	+	ymdB	BNILDI_19505	0.13	-1.5
3,919,178	-	ymdB	BNILDI_19505	0.14	+0.8
3,919,207	-	ymdB	BNILDI_19505	0.19	+0.8
3,919,299	+	ymdB	BNILDI_19505	0.36	+1.1
3,919,299	+	ymdB	BNILDI_19505	0.36	-0.8
3,919,300	-	ymdB	BNILDI_19505	0.37	+1.1
3,919,300	-	ymdB	BNILDI_19505	0.37	+0.8
3,919,437	+	ymdB	BNILDI_19505	0.62	+0.5
3,919,667	-				-0.2
3,919,673	-				+0.8
3,919,738	+				+1.8
3,919,741	-				-1.3
3,919,783	-		BNILDI_19510	0.16	-0.8
3,919,787	+		BNILDI_19510	0.17	-1.5
3,919,849	-		BNILDI_19510	0.37	+0.4
3,919,991	-		BNILDI_19510	0.83	-0.7
3,920,066	+				-0.2
3,920,094	+				-1.0
3,920,290	+	csgC	BNILDI_19515	0.38	+1.1
3,920,369	+	csgC	BNILDI_19515	0.61	-1.0
3,920,369	+	csgC	BNILDI_19515	0.61	+1.4
3,920,370	-	csgC	BNILDI_19515	0.62	-1.0
3,920,370	-	csgC	BNILDI_19515	0.62	-1.4
3,920,370	-	csgC	BNILDI_19515	0.62	-0.2
3,920,375	+	csgC	BNILDI_19515	0.63	+0.3
3,920,376	-	csgC	BNILDI_19515	0.63	-1.2
3,920,422	+	csgC	BNILDI_19515	0.77	-0.5
3,920,424	+	csgC	BNILDI_19515	0.78	-1.0
3,920,424	+	csgC	BNILDI_19515	0.78	-1.2
3,920,425	-	csgC	BNILDI_19515	0.78	+0.3
3,920,425	-	csgC	BNILDI_19515	0.78	+0.8
3,920,425	-	csgC	BNILDI_19515	0.78	-0.9
3,920,447	-	csgC	BNILDI_19515	0.85	+0.6
3,920,497	+				-0.8
3,920,554	+				+0.2
3,920,555	-				+0.2
3,920,557	+				+0.4
3,920,558	-				-0.5
3,920,558	-				-1.2
3,920,561	-				+0.8
3,920,561	-				+1.1
3,920,619	-	csgA	BNILDI_19520	0.14	-0.4