Strain Fitness in Escherichia coli ECRC62 around BNILDI_19275

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfabG and BNILDI_19270 are separated by 12 nucleotidesBNILDI_19270 and fabH are separated by 15 nucleotidesfabH and plsX are separated by 67 nucleotides BNILDI_19265: fabG - 3-oxoacyl-ACP reductase FabG, at 3,874,086 to 3,874,820 fabG BNILDI_19270: BNILDI_19270 - ACP S-malonyltransferase, at 3,874,833 to 3,875,762 _19270 BNILDI_19275: fabH - beta-ketoacyl-ACP synthase III, at 3,875,778 to 3,876,731 fabH BNILDI_19280: plsX - phosphate acyltransferase PlsX, at 3,876,799 to 3,877,839 plsX Position (kb) 3875 3876 3877Strain fitness (log2 ratio) -1 0 1at 3876.757 kb on - strandat 3876.759 kb on - strandat 3876.986 kb on - strand, within plsXat 3877.067 kb on - strand, within plsXat 3877.067 kb on - strand, within plsXat 3877.469 kb on - strand, within plsXat 3877.469 kb on - strand, within plsXat 3877.720 kb on - strand, within plsX

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,876,757 - -0.5
3,876,759 - -0.0
3,876,986 - plsX BNILDI_19280 0.18 -1.3
3,877,067 - plsX BNILDI_19280 0.26 -0.5
3,877,067 - plsX BNILDI_19280 0.26 -0.5
3,877,469 - plsX BNILDI_19280 0.64 -0.3
3,877,469 - plsX BNILDI_19280 0.64 -0.0
3,877,720 - plsX BNILDI_19280 0.88 +0.5

Or see this region's nucleotide sequence