Strain Fitness in Escherichia coli ECRC62 around BNILDI_19045

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycgX and ymgK are separated by 398 nucleotidesymgK and icd are separated by 678 nucleotides BNILDI_19040: ycgX - Uncharacterized protein YcgX, at 3,827,490 to 3,827,894 ycgX BNILDI_19045: ymgK - Protein YmgK, at 3,828,293 to 3,828,337 ymgK BNILDI_19050: icd - NADP-dependent isocitrate dehydrogenase, at 3,829,016 to 3,830,266 icd Position (kb) 3828 3829Strain fitness (log2 ratio) -1 0 1at 3827.303 kb on + strandat 3827.401 kb on - strandat 3827.434 kb on + strandat 3827.598 kb on + strand, within ycgXat 3827.760 kb on + strand, within ycgXat 3828.216 kb on + strandat 3828.956 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,827,303 + -0.3
3,827,401 - -0.4
3,827,434 + +0.6
3,827,598 + ycgX BNILDI_19040 0.27 +0.2
3,827,760 + ycgX BNILDI_19040 0.67 -0.4
3,828,216 + +1.1
3,828,956 + +0.7

Or see this region's nucleotide sequence