Strain Fitness in Escherichia coli ECRC62 around BNILDI_19000

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaidA and BNILDI_18995 are separated by 116 nucleotidesBNILDI_18995 and ymgF are separated by 399 nucleotidesymgF and pdeG are separated by 131 nucleotides BNILDI_18990: aidA - autotransporter outer membrane beta-barrel domain-containing protein, at 3,817,011 to 3,819,332 aidA BNILDI_18995: BNILDI_18995 - ATPase, at 3,819,449 to 3,819,658 _18995 BNILDI_19000: ymgF - Inner membrane protein YmgF, at 3,820,058 to 3,820,276 ymgF BNILDI_19005: pdeG - putative cyclic di-GMP phosphodiesterase PdeG, at 3,820,408 to 3,821,931 pdeG Position (kb) 3820 3821Strain fitness (log2 ratio) -1 0 1 2at 3819.090 kb on - strand, within aidAat 3819.306 kb on + strandat 3819.396 kb on - strandat 3819.523 kb on + strand, within BNILDI_18995at 3819.563 kb on - strand, within BNILDI_18995at 3819.876 kb on + strandat 3819.967 kb on + strandat 3820.240 kb on - strand, within ymgFat 3820.251 kb on + strand, within ymgFat 3820.317 kb on - strandat 3820.510 kb on - strandat 3820.669 kb on - strand, within pdeGat 3821.122 kb on + strand, within pdeG

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,819,090 - aidA BNILDI_18990 0.90 -0.6
3,819,306 + -0.2
3,819,396 - -0.6
3,819,523 + BNILDI_18995 0.35 -0.6
3,819,563 - BNILDI_18995 0.54 +0.2
3,819,876 + -0.4
3,819,967 + -0.8
3,820,240 - ymgF BNILDI_19000 0.83 +0.4
3,820,251 + ymgF BNILDI_19000 0.88 +0.8
3,820,317 - +0.5
3,820,510 - +0.4
3,820,669 - pdeG BNILDI_19005 0.17 +0.2
3,821,122 + pdeG BNILDI_19005 0.47 +2.2

Or see this region's nucleotide sequence