Strain Fitness in Escherichia coli ECRC62 around BNILDI_17555

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyddG and yddL are separated by 258 nucleotidesyddL and BNILDI_17560 are separated by 59 nucleotides BNILDI_17550: yddG - aromatic amino acid efflux DMT transporter YddG, at 3,531,516 to 3,532,340 yddG BNILDI_17555: yddL - Protein YddL, at 3,532,599 to 3,532,889 yddL BNILDI_17560: BNILDI_17560 - Putative type III effector protein (Leucine rich repeat protein), at 3,532,949 to 3,534,244 _17560 Position (kb) 3532 3533Strain fitness (log2 ratio) -1 0 1at 3531.649 kb on - strand, within yddGat 3531.757 kb on - strand, within yddGat 3531.760 kb on + strand, within yddGat 3531.761 kb on - strand, within yddGat 3531.826 kb on + strand, within yddGat 3531.827 kb on - strand, within yddGat 3531.836 kb on - strand, within yddGat 3531.836 kb on - strand, within yddGat 3531.839 kb on - strand, within yddGat 3532.092 kb on - strand, within yddGat 3532.092 kb on - strand, within yddGat 3532.131 kb on - strand, within yddGat 3532.136 kb on - strand, within yddGat 3532.897 kb on - strandat 3532.930 kb on - strandat 3532.932 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,531,649 - yddG BNILDI_17550 0.16 +0.7
3,531,757 - yddG BNILDI_17550 0.29 -0.2
3,531,760 + yddG BNILDI_17550 0.30 +1.0
3,531,761 - yddG BNILDI_17550 0.30 -0.1
3,531,826 + yddG BNILDI_17550 0.38 +0.2
3,531,827 - yddG BNILDI_17550 0.38 -0.4
3,531,836 - yddG BNILDI_17550 0.39 -0.4
3,531,836 - yddG BNILDI_17550 0.39 -0.0
3,531,839 - yddG BNILDI_17550 0.39 -0.7
3,532,092 - yddG BNILDI_17550 0.70 +1.3
3,532,092 - yddG BNILDI_17550 0.70 -0.3
3,532,131 - yddG BNILDI_17550 0.75 -0.9
3,532,136 - yddG BNILDI_17550 0.75 +0.1
3,532,897 - -1.1
3,532,930 - +0.7
3,532,932 + +0.9

Or see this region's nucleotide sequence