Strain Fitness in Escherichia coli ECRC62 around BNILDI_15550

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxM and BNILDI_15550 are separated by 88 nucleotidesBNILDI_15550 and BNILDI_15555 are separated by 36 nucleotides BNILDI_15545: lpxM - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 3,121,672 to 3,122,643 lpxM BNILDI_15550: BNILDI_15550 - alpha-mannosidase, at 3,122,732 to 3,125,806 _15550 BNILDI_15555: BNILDI_15555 - glycosyl hydrolase, at 3,125,843 to 3,127,711 _15555 Position (kb) 3122 3123 3124 3125 3126Strain fitness (log2 ratio) -2 -1 0 1 2at 3122.611 kb on + strandat 3122.728 kb on + strandat 3122.729 kb on - strandat 3123.323 kb on + strand, within BNILDI_15550at 3123.547 kb on - strand, within BNILDI_15550at 3123.613 kb on - strand, within BNILDI_15550at 3124.246 kb on + strand, within BNILDI_15550at 3124.397 kb on + strand, within BNILDI_15550at 3124.400 kb on - strand, within BNILDI_15550at 3124.441 kb on - strand, within BNILDI_15550at 3124.528 kb on - strand, within BNILDI_15550at 3124.644 kb on + strand, within BNILDI_15550at 3125.147 kb on + strand, within BNILDI_15550at 3125.789 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,122,611 + +1.7
3,122,728 + +0.7
3,122,729 - -0.1
3,123,323 + BNILDI_15550 0.19 +0.7
3,123,547 - BNILDI_15550 0.27 -0.0
3,123,613 - BNILDI_15550 0.29 +0.7
3,124,246 + BNILDI_15550 0.49 -0.4
3,124,397 + BNILDI_15550 0.54 -1.6
3,124,400 - BNILDI_15550 0.54 +0.0
3,124,441 - BNILDI_15550 0.56 -2.2
3,124,528 - BNILDI_15550 0.58 +2.7
3,124,644 + BNILDI_15550 0.62 +0.9
3,125,147 + BNILDI_15550 0.79 -0.3
3,125,789 - -0.7

Or see this region's nucleotide sequence